Normalized Codon Adaptation Index (nCAI)
nCAI = CAIhost / CAIself
HOW TO CITE:
Truong Nguyen P, Garcia-Vallve S, Puigbo P. (2021) An unsupervised algorithm for host identification in flaviviruses. Life, 11(5):442. https://doi.org/10.3390/life11050442
Click here to see an example
Insert your sequences in FASTA format
Insert codon usage table (codon usage database format)
Choose genetic code
1: Standard
2: Vertebrate Mitochondrial
3: Yeast Mitochondrial
4: Mold, Protozoan, Coelenterate Mitochondrial and Mycoplasma/Spiroplasma
5: Invertebrate Mitochondrial
6: Ciliate Macronuclear and Dasycladacean
9: Echinoderm Mitochondrial
10: Alternative Ciliate Macronuclear
11: Eubacterial
12: Alternative Yeast
13: Ascidian Mitochondrial
14: Flatworm Mitochondrial
15: Blepharisma Nuclear Code
Click here to see an example