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| Abbrev | Code | Upstream Logo |
| aaur | NC_008711.1 |  |
| abau | NC_009085.1 |  |
| abor | NC_008260.1 |  |
| acineto | NC_005966.1 |  |
| afb2 | NC_008541.1 |  |
| ahyd | NC_008570.1 |  |
| aple | NC_009053.1 |  |
| atum1c12 | NC_003063.1 |  |
| atum2c12 | NC_003304.1 |  |
| baboc12 | NC_006932.1 |  |
| bado | NC_008618.1 |  |
| bant2 | NC_005945.1 |  |
| banth1 | NC_003997.3 |  |
| bant | NC_007530.2 |  |
| bcer1 | NC_003909.8 |  |
| bcer2 | NC_006274.1 |  |
| bcer | NC_004722.1 |  |
| bcla | NC_006582.1 |  |
| bdel | NC_005363.1 |  |
| bfra1 | NC_006347.1 |  |
| bfra2 | NC_003228.3 |  |
| bhal | NC_002570.2 |  |
| bilo | NC_004307.2 |  |
| blic2 | NC_006322.1 |  |
| blic | NC_006270.2 |  |
| bmel | NC_007624.1 |  |
| bmelic12 | NC_003318.1 |  |
| bsub | NC_000964.2 |  |
| bsuisc12 | NC_004310.3 |  |
| btht | NC_004663.1 |  |
| bthu1 | NC_008600.1 |  |
| bthu | NC_005957.1 |  |
| bxen | NC_007952.1 |  |
| cglu | NC_003450.3 |  |
| chut | NC_008255.1 |  |
| chvi | NC_005085.1 |  |
| cjei | NC_007164.1 |  |
| codi | NC_002935.2 |  |
| coeff | NC_004369.1 |  |
| cpsy | NC_003910.7 |  |
| daro | NC_007298.1 |  |
| ddes | NC_007519.1 |  |
| dhaf | NC_007907.1 |  |
| dpsy | NC_006138.1 |  |
| dra12 | NC_001263.1 |  |
| dvul1 | NC_008751.1 |  |
| ecar | NC_004547.2 |  |
| ecol2 | NC_008253.1 |  |
| ecol3 | NC_008563.1 |  |
| ecol4 | AC_000091.1 |  |
| ecol | NC_007946.1 |  |
| ecoli2 | NC_002695.1 |  |
| ecoli3 | NC_002655.2 |  |
| ecoli4 | NC_004431.1 |  |
| ecoli | NC_000913.2 |  |
| elit | NC_007722.1 |  |
| enfe | NC_004668.1 |  |
| gfor | NC_008571.1 |  |
| goxy1 | NC_006677.1 |  |
| hars | NC_009138.1 |  |
| hche | NC_007645.1 |  |
| hduc | NC_002940.2 |  |
| hinf2 | NC_007146.1 |  |
| hinf | NC_000907.1 |  |
| hsom | NC_008309.1 |  |
| iloi | NC_006512.1 |  |
| laci | NC_006814.2 |  |
| lajo | NC_005362.1 |  |
| lapla | NC_004567.1 |  |
| lbre | NC_008497.1 |  |
| lcas | NC_008526.1 |  |
| ldel1 | NC_008529.1 |  |
| ldel | NC_008054.1 |  |
| lgas | NC_008530.1 |  |
| linno | NC_003212.1 |  |
| llac1 | NC_009004.1 |  |
| llac2 | NC_008527.1 |  |
| llac | NC_002662.1 |  |
| lmes | NC_008531.1 |  |
| lmon | NC_002973.6 |  |
| lmono | NC_003210.1 |  |
| lsak | NC_007576.1 |  |
| lsal | NC_007929.1 |  |
| lwel | NC_008555.1 |  |
| maqu | NC_008740.1 |  |
| mfla | NC_007947.1 |  |
| mhun | NC_007796.1 |  |
| mjan | NC_000909.1 |  |
| mmar2 | NC_009135.1 |  |
| mmar | NC_005791.1 |  |
| mmc | NC_008576.1 |  |
| msuc | NC_006300.1 |  |
| neut | NC_008344.1 |  |
| ngon | NC_002946.2 |  |
| nmen1 | NC_003112.2 |  |
| nmen2 | NC_003116.1 |  |
| nmen | NC_008767.1 |  |
| ocih | NC_004193.1 |  |
| pacn | NC_006085.1 |  |
| paer1 | NC_008463.1 |  |
| paer | NC_002516.2 |  |
| parc | NC_007204.1 |  |
| patl | NC_008228.1 |  |
| pcry | NC_007969.1 |  |
| pent | NC_008027.1 |  |
| pflu2 | NC_007492.1 |  |
| pflu | NC_004129.6 |  |
| phalc12 | NC_007482.1 |  |
| pholu | NC_005126.1 |  |
| ping | NC_008709.1 |  |
| pmul | NC_002663.1 |  |
| porgi | NC_002950.2 |  |
| ppen | NC_008525.1 |  |
| pproc12 | NC_006370.1 |  |
| pput | NC_002947.3 |  |
| psy | NC_004578.1 |  |
| psyr2 | NC_007005.1 |  |
| psyr | NC_005773.3 |  |
| rden | NC_008209.1 |  |
| reutc12 | NC_007347.1 |  |
| rmet | NC_007973.1 |  |
| saga1 | NC_004368.1 |  |
| saga2 | NC_007432.1 |  |
| saga | NC_004116.1 |  |
| sama | NC_008700.1 |  |
| sana | NC_008577.1 |  |
| sau1 | NC_002745.2 |  |
| sau2 | NC_002758.2 |  |
| sau3 | NC_003923.1 |  |
| saur1 | NC_007795.1 |  |
| saur2 | NC_002952.2 |  |
| saur3 | NC_002953.3 |  |
| saur4 | NC_007622.1 |  |
| saur5 | NC_007793.1 |  |
| saur | NC_002951.2 |  |
| sbal | NC_009052.1 |  |
| sboy | NC_007613.1 |  |
| sden | NC_007954.1 |  |
| sdys | NC_007606.1 |  |
| sent2 | NC_006905.1 |  |
| sent3 | NC_006511.1 |  |
| sent | NC_003198.1 |  |
| sepi2 | NC_002976.3 |  |
| sepi | NC_004461.1 |  |
| sfle | NC_008258.1 |  |
| sfri | NC_008345.1 |  |
| sglo | NC_007712.1 |  |
| shae | NC_007168.1 |  |
| sheon1 | NC_004347.1 |  |
| shifle2 | NC_004741.1 |  |
| sloi | NC_009092.1 |  |
| smel | NC_003047.1 |  |
| smr1 | NC_008322.1 |  |
| smr | NC_008321.1 |  |
| smut | NC_004350.1 |  |
| spne | NC_008533.1 |  |
| spneu1 | NC_003028.2 |  |
| spneu2 | NC_003098.1 |  |
| spyo10 | NC_008021.1 |  |
| spyo1 | NC_008022.1 |  |
| spyo2 | NC_003485.1 |  |
| spyo3 | NC_004070.1 |  |
| spyo4 | NC_004606.1 |  |
| spyo5 | NC_006086.1 |  |
| spyo6 | NC_007297.1 |  |
| spyo7 | NC_007296.1 |  |
| spyo8 | NC_008024.1 |  |
| spyo9 | NC_008023.1 |  |
| spyo | NC_002737.1 |  |
| ssan | NC_009009.1 |  |
| ssap | NC_007350.1 |  |
| sson | NC_007384.1 |  |
| sthe1 | NC_008532.1 |  |
| sthe2 | NC_006448.1 |  |
| sthe | NC_006449.1 |  |
| stm1 | NC_008044.1 |  |
| styp2 | NC_004631.1 |  |
| styp | NC_003197.1 |  |
| sw3 | NC_008750.1 |  |
| tcru | NC_007520.2 |  |
| tden3 | NC_007575.1 |  |
| vcolc12 | NC_002506.1 |  |
| vfisc12 | NC_006841.1 |  |
| vipac12 | NC_004603.1 |  |
| vivul1c12 | NC_004459.1 |  |
| vivul2c12 | NC_005140.1 |  |
| wolsuc | NC_005090.1 |  |
| xfas2 | NC_004556.1 |  |
| xfas | NC_002488.3 |  |
| yent | NC_008800.1 |  |
| ypes1 | NC_008149.1 |  |
| ypes | NC_008150.1 |  |
| ypestis2 | NC_004088.1 |  |
| ypestis3 | NC_005810.1 |  |
| ypestis | NC_003143.1 |  |
| ypse | NC_006155.1 |  |