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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| aple | NC_009053.1 | >ref|NC_009053.1|:58930-60636 | UAA | U | UUC | UUCGGAUUAA |
| aple | NC_009053.1 | >ref|NC_009053.1|:60795-61058 | UAA | U | UUU | UUUGUAUUAG |
| aple | NC_009053.1 | >ref|NC_009053.1|:c85655-85329 | UAA | U | UUA | UUACCAAUCG |
| aple | NC_009053.1 | >ref|NC_009053.1|:131960-132232 | UAA | U | UAG | UAGAAGCUUG |
| aple | NC_009053.1 | >ref|NC_009053.1|:c135187-134978 | UAA | U | UUC | UUCUUUGCAA |
| aple | NC_009053.1 | >ref|NC_009053.1|:172680-173909 | UAA | U | UGG | UGGCGAGUAA |
| aple | NC_009053.1 | >ref|NC_009053.1|:210047-210343 | UAA | U | UAC | UACCAAAUAG |
| aple | NC_009053.1 | >ref|NC_009053.1|:241585-243516 | UAA | U | UUU | UUUUUAACUC |
| aple | NC_009053.1 | >ref|NC_009053.1|:274183-274824 | UAA | U | UUU | UUUCAUUAUU |
| aple | NC_009053.1 | >ref|NC_009053.1|:336904-337374 | UAA | U | UUA | UUAAGAUUGA |
| aple | NC_009053.1 | >ref|NC_009053.1|:c369102-368623 | UAA | U | UUU | UUUGUAUUUA |
| aple | NC_009053.1 | >ref|NC_009053.1|:c429662-428217 | UAA | U | UUC | UUCGUUAGCC |
| aple | NC_009053.1 | >ref|NC_009053.1|:c467511-466705 | UAA | U | UUU | UUUUCGUUUG |
| aple | NC_009053.1 | >ref|NC_009053.1|:c485164-483824 | UAA | U | UCU | UCUUGAUCUA |
| aple | NC_009053.1 | >ref|NC_009053.1|:532111-532962 | UAA | U | UUA | UUAAGUUAGU |
| aple | NC_009053.1 | >ref|NC_009053.1|:555322-556590 | UAA | U | UUU | UUUACAGUUU |
| aple | NC_009053.1 | >ref|NC_009053.1|:556776-557063 | UAA | C | CGG | CGGUUUAAAA |
| aple | NC_009053.1 | >ref|NC_009053.1|:c627858-627628 | UAA | U | UCU | UCUAGGAAUA |
| aple | NC_009053.1 | >ref|NC_009053.1|:639615-640466 | UAA | U | UCG | UCGUUAUUAA |
| aple | NC_009053.1 | >ref|NC_009053.1|:643158-643715 | UAA | U | UUC | UUCUCAAUUU |
| aple | NC_009053.1 | >ref|NC_009053.1|:c652653-650506 | UAA | U | UCU | UCUUUGCUGA |
| aple | NC_009053.1 | >ref|NC_009053.1|:688029-688424 | UAA | U | UCA | UCACGGAGCA |
| aple | NC_009053.1 | >ref|NC_009053.1|:c711133-710915 | UAA | U | UUU | UUUCGAGUAU |
| aple | NC_009053.1 | >ref|NC_009053.1|:c737952-735814 | UAA | U | UGA | UGAGAAAAGU |
| aple | NC_009053.1 | >ref|NC_009053.1|:770614-772017 | UAG | U | UCA | UCACUAUUUU |
| aple | NC_009053.1 | >ref|NC_009053.1|:773923-774489 | UAA | U | UCG | UCGAAACUAA |
| aple | NC_009053.1 | >ref|NC_009053.1|:c846573-844909 | UAA | U | UCU | UCUAAUUUUA |
| aple | NC_009053.1 | >ref|NC_009053.1|:c885378-883954 | UAA | U | UUC | UUCGGCUUGA |
| aple | NC_009053.1 | >ref|NC_009053.1|:1007146-1008453 | UAA | U | UUU | UUUAGUUUGU |
| aple | NC_009053.1 | >ref|NC_009053.1|:c1052397-1051576 | UAA | C | CGA | CGAAAUAUUC |
| aple | NC_009053.1 | >ref|NC_009053.1|:c1071697-1071314 | UAA | U | UCG | UCGCAAAAUC |
| aple | NC_009053.1 | >ref|NC_009053.1|:1141834-1143360 | UAA | U | UUU | UUUCGUUUAG |
| aple | NC_009053.1 | >ref|NC_009053.1|:1169387-1169656 | UAA | U | UCG | UCGGAAGUCA |
| aple | NC_009053.1 | >ref|NC_009053.1|:c1179676-1178033 | UAA | U | UUU | UUUCGAAUUG |
| aple | NC_009053.1 | >ref|NC_009053.1|:c1247505-1247188 | UAA | U | UGA | UGAUUUAGUG |
| aple | NC_009053.1 | >ref|NC_009053.1|:1326928-1327668 | UAA | U | UCU | UCUUAUUUGA |
| aple | NC_009053.1 | >ref|NC_009053.1|:c1346319-1345870 | UAA | U | UUU | UUUCUUGCCC |
| aple | NC_009053.1 | >ref|NC_009053.1|:c1410103-1409885 | UAA | U | UCC | UCCACACAUA |
| aple | NC_009053.1 | >ref|NC_009053.1|:c1487161-1486517 | UAA | U | UUU | UUUCCUAUUG |
| aple | NC_009053.1 | >ref|NC_009053.1|:1696909-1697643 | UAA | U | UUA | UUAGCAAUUG |
| aple | NC_009053.1 | >ref|NC_009053.1|:1722708-1723151 | UAA | U | UCG | UCGGCAAAAU |
| aple | NC_009053.1 | >ref|NC_009053.1|:1723353-1724654 | UAA | U | UCG | UCGUUAAAGU |
| aple | NC_009053.1 | >ref|NC_009053.1|:c1729163-1727979 | UAA | U | UUC | UUCUCAAACA |
| aple | NC_009053.1 | >ref|NC_009053.1|:1820008-1820397 | UAA | U | UUG | UUGCUUUUUG |
| aple | NC_009053.1 | >ref|NC_009053.1|:c1857312-1855480 | UAA | U | UUC | UUCGAAUAAA |
| aple | NC_009053.1 | >ref|NC_009053.1|:c1942135-1941209 | UAA | U | UCU | UCUAGAUAAA |
| aple | NC_009053.1 | >ref|NC_009053.1|:1950038-1950727 | UAA | U | UAC | UACAAUGGCU |
| aple | NC_009053.1 | >ref|NC_009053.1|:1951568-1951936 | UAA | U | UUU | UUUCUAAUCG |
| aple | NC_009053.1 | >ref|NC_009053.1|:1957228-1961256 | UAA | U | UUU | UUUUUGAUUU |
| aple | NC_009053.1 | >ref|NC_009053.1|:1961382-1965620 | UAA | U | UCG | UCGUCAGCCG |
| aple | NC_009053.1 | >ref|NC_009053.1|:c1995554-1994160 | UAG | C | CAG | CAGCGUUAUU |
| aple | NC_009053.1 | >ref|NC_009053.1|:1997752-1998354 | UAA | G | GUC | GUCUAGGAGA |
| aple | NC_009053.1 | >ref|NC_009053.1|:1998351-1998656 | UGA | U | UUC | UUCAACAAGA |
| aple | NC_009053.1 | >ref|NC_009053.1|:1998677-1999498 | UAA | U | UUA | UUACGGAGGA |
| aple | NC_009053.1 | >ref|NC_009053.1|:1999812-2000144 | UAA | U | UUU | UUUUAUUCAU |
| aple | NC_009053.1 | >ref|NC_009053.1|:2000163-2000870 | UAA | U | UCG | UCGGUAGGAG |
| aple | NC_009053.1 | >ref|NC_009053.1|:2000884-2001294 | UAA | G | GGA | GGAGAAUCAC |
| aple | NC_009053.1 | >ref|NC_009053.1|:2001485-2001739 | UAA | U | UGA | UGAAAGCUCA |
| aple | NC_009053.1 | >ref|NC_009053.1|:2005415-2005594 | UAA | U | UCU | UCUACAAAUU |
| aple | NC_009053.1 | >ref|NC_009053.1|:2005599-2006033 | UAA | U | UAG | UAGAAUGCGU |
| aple | NC_009053.1 | >ref|NC_009053.1|:2007385-2007498 | UAA | U | UAG | UAGAUGGCAA |
| aple | NC_009053.1 | >ref|NC_009053.1|:2008008-2008397 | UAA | U | UUA | UUAGUAUUCU |
| aple | NC_009053.1 | >ref|NC_009053.1|:2010213-2010527 | UAA | U | UUG | UUGACGUUAG |
| aple | NC_009053.1 | >ref|NC_009053.1|:c2042195-2041962 | UAA | U | UAG | UAGCUUAAAC |
| aple | NC_009053.1 | >ref|NC_009053.1|:c2130701-2130174 | UAA | U | UUA | UUAAAUCCUU |
| aple | NC_009053.1 | >ref|NC_009053.1|:2191781-2192059 | UAA | U | UUU | UUUGCAGUUA |
| aple | NC_009053.1 | >ref|NC_009053.1|:2198900-2199136 | UAA | U | UUA | UUAAGCUAUU |
| aple | NC_009053.1 | >ref|NC_009053.1|:2199148-2199318 | UAA | G | GGA | GGAGCUAACC |
| aple | NC_009053.1 | >ref|NC_009053.1|:2200641-2201936 | UAA | U | UUU | UUUUGGUUUA |
| aple | NC_009053.1 | >ref|NC_009053.1|:2202065-2203600 | UAA | U | UUU | UUUUAACCCU |
| aple | NC_009053.1 | >ref|NC_009053.1|:c2219221-2218496 | UAA | U | UCG | UCGGUAAAAC |