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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:c83245-82025 | UGA | U | UCU | UCUUUCCCGC |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:682062-682484 | UAA | G | GCC | GCCUGCCGAU |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:c732220-731966 | UGA | U | UAG | UAGUCACAAU |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:c818424-818182 | UAA | U | UUC | UUCUGUGUGC |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:905550-906305 | UGA | U | UUG | UUGGCUUCCU |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:c968529-967120 | UGA | G | GGA | GGAGGGUUGG |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:c1141338-1140421 | UAA | C | CCU | CCUUCUGUGU |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:c1186629-1186201 | UGA | U | UUA | UUAUAGUUCU |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:1482219-1483151 | UAA | A | AAU | AAUAGUCUGU |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:1485532-1486155 | UAG | A | AGU | AGUCGGUUCC |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:1487024-1488127 | UAA | U | UCG | UCGCUUCCUG |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:1658433-1658654 | UGA | U | UAC | UACGAUCUGG |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:1665666-1667657 | UGA | U | UCC | UCCGAAUUGC |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:1667798-1668805 | UGA | U | UUU | UUUUGAAACG |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:1681255-1681380 | UGA | U | UAA | UAACGGCAAC |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:c1727960-1726395 | UAA | U | UCU | UCUUAUUUCU |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:1747047-1748663 | UGA | U | UAC | UACGGUCUUU |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:c1758202-1757798 | UGA | U | UCG | UCGGAACAUA |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:c1900705-1899776 | UAA | C | CAG | CAGGCUUGGG |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:1977990-1978955 | UGA | U | UUU | UUUUAGCCAU |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:2005592-2006200 | UGA | G | GCA | GCACCCUUCA |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:c2012656-2011046 | UAA | A | AGC | AGCCUUUCCA |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:2043309-2043713 | UAA | C | CCA | CCAUAGGUUA |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:2049570-2051483 | UAA | G | GCC | GCCAGCCCCC |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:2061168-2062214 | UAA | U | UUC | UUCCUGACCG |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:2065221-2065994 | UAA | G | GGC | GGCCCAGGCU |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:2080676-2081941 | UGA | C | CCU | CCUGAAACUG |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:2083543-2085156 | UGA | U | UUG | UUGACCCUAU |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:2086278-2089157 | UAA | C | CAA | CAAUGACGCA |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:2091577-2093721 | UAG | G | GAA | GAACGCAUGC |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:2106213-2106986 | UAA | G | GCG | GCGUUGCAUC |
| bsuisc12 | NC_004310.3 | >ref|NC_004310.3|:2107322-2107588 | UGA | A | AGA | AGAACAGAGA |
| bsuisc12 | NC_004310.3 | >ref|NC_004311.2|:c113920-112817 | UGA | U | UUG | UUGCCAGCCU |