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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| cjei | NC_007164.1 | >ref|NC_007164.1|:57190-57333 | UAA | A | AAA | AAACUCCUUG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:88348-89886 | UAA | A | AGC | AGCUCGAUCA |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c132893-132291 | UGA | G | GCC | GCCUAGCCGC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c176739-174637 | UAG | G | GGG | GGGCUGGUUC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c191761-191198 | UAG | C | CUG | CUGCUAGUUG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c243837-242671 | UAA | U | UGG | UGGCUGAAGA |
| cjei | NC_007164.1 | >ref|NC_007164.1|:263817-264200 | UAG | G | GGU | GGUCCGCUGG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:269105-270139 | UAA | A | AAC | AACAAGACCC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c291976-289658 | UAG | G | GUU | GUUCCGCUAG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:327201-328844 | UAA | C | CAU | CAUGACUCGG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:329109-329231 | UAA | G | GCC | GCCCCGUGUG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c338175-337693 | UAA | G | GCU | GCUUCCGCUU |
| cjei | NC_007164.1 | >ref|NC_007164.1|:359226-360644 | UAA | A | AGC | AGCGCUAGAU |
| cjei | NC_007164.1 | >ref|NC_007164.1|:365369-368026 | UAA | C | CCC | CCCCGCCACA |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c375692-375096 | UAA | C | CUA | CUAAGCCUUU |
| cjei | NC_007164.1 | >ref|NC_007164.1|:450420-451523 | UAA | G | GCC | GCCGGGCAGG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:466113-466340 | UAA | U | UCA | UCAAACGCUG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c468047-467112 | UAG | U | UCG | UCGGCUGCGC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:538417-539217 | UAA | A | ACC | ACCCUGUGUG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:539331-540131 | UAA | A | ACC | ACCCCUUAUC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:599644-600909 | UAG | U | UCU | UCUGAUCUCU |
| cjei | NC_007164.1 | >ref|NC_007164.1|:649315-650985 | UAA | G | GGC | GGCCUAGCCG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:658708-660288 | UAG | U | UCG | UCGGACAGCU |
| cjei | NC_007164.1 | >ref|NC_007164.1|:672768-673178 | UAA | G | GAG | GAGUCGUCCU |
| cjei | NC_007164.1 | >ref|NC_007164.1|:677836-678102 | UAA | A | ACA | ACAGCUGGAA |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c696099-695836 | UAA | G | GCU | GCUCUCGCUA |
| cjei | NC_007164.1 | >ref|NC_007164.1|:728105-729250 | UAA | G | GAC | GACUUAAGAC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c845975-843846 | UAG | C | CCC | CCCAUGACAG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:865084-865692 | UAA | G | GCA | GCAGCCCUUA |
| cjei | NC_007164.1 | >ref|NC_007164.1|:904865-906013 | UAA | A | AUU | AUUUUUUAGU |
| cjei | NC_007164.1 | >ref|NC_007164.1|:974171-975721 | UAA | U | UAG | UAGCGCUAGC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c978332-976869 | UAA | A | ACC | ACCACUCGAC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c989053-988202 | UAA | A | AGC | AGCGCCGCUA |
| cjei | NC_007164.1 | >ref|NC_007164.1|:996340-996723 | UAA | C | CUU | CUUAAAGCCC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:1008297-1009493 | UAA | A | AGC | AGCCAGCUUU |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c1018668-1016743 | UAG | G | GCA | GCACUGGCAC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c1092273-1090858 | UAA | U | UAG | UAGGGGUUAG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c1161929-1161174 | UAA | G | GGA | GGAAUAACUC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c1396999-1396481 | UAG | U | UUG | UUGCUAGAGC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:1712297-1713700 | UAG | U | UAG | UAGCUUUCGC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:1722207-1723382 | UAG | G | GCG | GCGAAAGCUA |
| cjei | NC_007164.1 | >ref|NC_007164.1|:1730343-1730864 | UAA | G | GGU | GGUCUAGCCU |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c1747057-1745780 | UAG | U | UUU | UUUCCGGCGG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:1829955-1830713 | UAA | U | UCC | UCCACUCCCC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c1840413-1839154 | UAA | G | GGC | GGCUUAGCUA |
| cjei | NC_007164.1 | >ref|NC_007164.1|:1998104-1998964 | UAA | G | GGU | GGUUGUUAGG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c2017376-2017077 | UAG | C | CCC | CCCCCGCACC |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c2096749-2096180 | UAA | A | ACC | ACCGGCAGCG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c2129482-2129189 | UAA | G | GAA | GAACGGCCCU |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c2139730-2138540 | UAA | A | AAC | AACAGCUCUA |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c2245015-2242982 | UAG | A | ACC | ACCUUUAACG |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c2258326-2256896 | UAA | G | GCC | GCCGCUUGUU |
| cjei | NC_007164.1 | >ref|NC_007164.1|:c2364152-2363994 | UAG | G | GGU | GGUCCCGGGA |