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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:12195-14111 | UAA | U | UCA | UCAUACUUAG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:23899-26715 | UAA | U | UCG | UCGCCCUAUA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:27317-27766 | UGA | U | UGA | UGAGUCAAUC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:32690-35911 | UAA | C | CAU | CAUGCAGAUC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c57881-56595 | UAA | U | UAG | UAGCGUGUCA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:110702-113407 | UAA | G | GAA | GAAUUGACUG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:129227-131890 | UAA | A | AAG | AAGCUAACAG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:131905-133797 | UAA | G | GAG | GAGGUAAAAG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:134001-135428 | UAA | G | GUA | GUAAAAGAGC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:137629-140379 | UAA | U | UUU | UUUUUCGUUU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c162937-162323 | UAA | U | UAA | UAAGUAAGCG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:186681-188105 | UAA | U | UCU | UCUGCUGUUC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c190989-190165 | UAA | U | UCU | UCUCCCUCAA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:197685-198206 | UAA | U | UAA | UAAGGCACGC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:205259-205744 | UGA | U | UUU | UUUCUUGAAC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:213398-214357 | UAA | G | GUA | GUAAUGCCUU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c223505-221787 | UAA | U | UCG | UCGGCAAAUG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:407258-410245 | UAA | U | UCU | UCUUUUCAAC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:443259-443591 | UAA | U | UAU | UAUUCUUCAC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c447847-446963 | UAA | U | UUA | UUAAAAUUUU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:473142-474416 | UAG | C | CAG | CAGGCGUAAU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:477167-477439 | UAA | U | UUA | UUAACCAUUC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:477631-479502 | UAA | G | GCG | GCGUUGUCCC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:509805-510134 | UAA | U | UCC | UCCUGAAGCC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:510849-512723 | UGA | U | UGC | UGCAAACCAG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:512847-513548 | UGA | U | UGU | UGUCAUGCCG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:551487-552848 | UAA | U | UCA | UCAAGCCGCC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:567227-568612 | UAA | U | UCU | UCUGGCCCUG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c592477-591824 | UAA | U | UUG | UUGCGCUAUU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:625105-626700 | UAA | A | AUU | AUUUCCUUUG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c633662-632088 | UAA | G | GAA | GAAGAAGUAA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:691417-693081 | UAA | U | UCU | UCUGCUUUAU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:698754-700394 | UAA | U | UUU | UUUUAAGUUC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c723656-722373 | UAA | A | ACA | ACAUAUCAAA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:727954-730755 | UAA | U | UGC | UGCGGAGACA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:730770-731987 | UAA | A | AUA | AUAAAGGAUA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:732081-733247 | UAG | U | UAG | UAGUUUAAGC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:733247-734116 | UAA | U | UGU | UGUCCAUUUU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:744395-744916 | UAA | A | AUA | AUAUCUGUAA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c752382-751630 | UAA | G | GAG | GAGAAUUGCA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c865549-864818 | UAA | U | UCA | UCACUUCGGU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c990282-989194 | UAA | U | UUC | UUCUCUGACU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:1140220-1141653 | UAA | U | UAC | UACAUCCUCU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c1174354-1172984 | UAA | U | UCC | UCCGUAAGAC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c1271537-1270446 | UAA | U | UCA | UCACUACAUG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:1296137-1297675 | UGA | A | AAA | AAAUUCGUUC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c1311598-1308923 | UGA | U | UCG | UCGAACUCGU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c1620474-1619182 | UAA | G | GGG | GGGGGCGAAC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:1734159-1735661 | UAA | C | CUA | CUAUUCAGUU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:1749225-1749632 | UAA | A | AAU | AAUUCAGGGA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c1751101-1750754 | UAA | U | UCU | UCUCCUGCCG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:1772469-1774097 | UAA | U | UAA | UAACUGAUGG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c1815767-1814772 | UAA | U | UAU | UAUUGCUUUU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c1879948-1879202 | UAA | G | GUU | GUUGAGAUGA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c1940669-1940028 | UAA | C | CAG | CAGGUGAGCG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:2016235-2017317 | UAA | U | UCG | UCGCGUUAUA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c2175879-2174515 | UAA | U | UCU | UCUGAUUACU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c2354334-2353336 | UAA | U | UCC | UCCCCCUUCA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c2485529-2484672 | UGA | U | UAU | UAUUGAGAUA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c2546708-2545488 | UGA | U | UUU | UUUCACACCG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c2653129-2651714 | UAA | G | GAC | GACCAUACAU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c2674886-2673870 | UAA | U | UUC | UUCUUGCUGC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c2839571-2838312 | UAA | U | UGA | UGACUCAGGC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:3204705-3205916 | UAA | G | GUC | GUCCUUUCGC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c3230935-3229418 | UAA | U | UUA | UUACUCUUCA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c3243782-3240909 | UAA | U | UUA | UUAGCCGAUG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c3295379-3294333 | UAA | U | UCU | UCUUUCUUCA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c3544177-3542765 | UAA | U | UCG | UCGGUAGGCC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c3660785-3660393 | UAA | G | GCG | GCGAGGUAAC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c3732823-3732434 | UAA | U | UUU | UUUGUGACGC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c3799083-3798079 | UGA | G | GCC | GCCAGUGGAA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c3939770-3937728 | UAA | U | UGA | UGAUUUGAAG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4007925-4006318 | UAA | A | AUG | AUGUUAAAGG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4079771-4081315 | UAA | U | UCC | UCCAUUCCCA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4085856-4084831 | UAA | U | UCC | UCCCUCCCCA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4113434-4113709 | UAA | G | GAG | GAGCUCUGCA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4161786-4161373 | UAA | U | UCA | UCACAAAGCG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4183079-4184509 | UGA | U | UUC | UUCGGUGAGU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4202118-4201345 | UAA | U | UUA | UUAAAACACU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4251579-4253054 | UAA | U | UGA | UGAUGGCAGA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4286861-4286541 | UAA | U | UAG | UAGCGAUUCA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4361589-4362215 | UAA | A | AAA | AAAAACGCUC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4376003-4374594 | UAA | U | UUC | UUCAAUGUAA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4409780-4410406 | UAA | U | UUU | UUUCGUUUUU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4416468-4417490 | UAA | U | UCA | UCAUUUGAUG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4420483-4419716 | UAA | U | UGA | UGAUUUCGGA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4497525-4498709 | UAA | U | UCU | UCUGACCUUC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4499324-4499869 | UAA | U | UUG | UUGCCGAUAA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4501456-4501953 | UAA | C | CCC | CCCAGCGAUC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4502672-4506733 | UAA | U | UCG | UCGCAGUUAU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4506810-4511033 | UAA | U | UUC | UUCUCGCUCA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4520819-4521091 | UAA | U | UCG | UCGUUAAUCC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4528043-4526454 | UAA | G | GAU | GAUUGCGUGG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4558606-4560255 | UAA | C | CAA | CAACCAACGC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4570967-4572307 | UAA | U | UCA | UCAUUGUCGA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4615143-4615736 | UAA | U | UAG | UAGCAAAACC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4691736-4690090 | UGA | U | UUU | UUUGUCUUUA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4783222-4783788 | UAA | U | UUG | UUGCCCUGCA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4788031-4787306 | UAA | U | UGC | UGCGGUUGUG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4812223-4813521 | UAA | U | UAU | UAUAACGACU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4832565-4832960 | UAA | U | UUC | UUCUGGUACG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4833555-4834004 | UAA | U | UUU | UUUCUGAUGA |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4864417-4863887 | UAA | U | UUC | UUCGUUAUUC |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4900390-4897535 | UAA | U | UUA | UUAAGCGUUG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:4932680-4934140 | UAA | U | UAC | UACCCACCGG |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:c4981591-4979426 | UAA | C | CUA | CUAACUGAUU |
| ecol3 | NC_008563.1 | >ref|NC_008563.1|:5051607-5052212 | UAA | U | UUC | UUCUUGCCUC |