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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:8238-9191 | UGA | C | CGC | CGCGUACAGG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c10494-9928 | UAA | U | UCA | UCAUUCUUAG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c21078-20815 | UAA | U | UCG | UCGCCCUAUA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:30817-34038 | UGA | U | UGA | UGAGUCAAUC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:108279-110984 | UAA | U | UAG | UAGCGUGUCA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:123017-125680 | UAA | A | AAG | AAGCUAACUG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:125695-127587 | UAA | G | GAG | GAGGUAAAAG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:127912-129336 | UAA | G | GUA | GUAAAAGAGC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:131615-134212 | UAA | U | UUU | UUUUUCGUUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:141431-141967 | UAA | A | AAA | AAAGUCAGCG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:176610-176954 | UAA | G | GUG | GUGUGAAGUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:180884-182308 | UAA | U | UCU | UCUGUUGUUC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c185947-185123 | UAA | U | UCU | UCUCCCUCAA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:190857-191708 | UAA | U | UAA | UAAGGCUUGA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:192872-193429 | UAA | U | UUA | UUAUCAAAAA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:200482-200967 | UGA | U | UUU | UUUCUUGAAC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:208621-209580 | UAA | G | GUA | GUAAUGCCUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c218775-217057 | UAA | U | UUC | UUCGCAAAAG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:426511-426843 | UAA | U | UCU | UCUUUUCAAC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c431237-430353 | UAA | U | UUA | UUAAAAUUUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c453391-452813 | UGA | A | AAU | AAUUAGUAAG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:456650-457924 | UAA | U | UUU | UUUACGCAGC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:460675-460947 | UAA | U | UUA | UUAACCAUUC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:461139-463010 | UAA | G | GCG | GCGUUGUCCC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:490636-491187 | UAA | U | UCC | UCCUGAAGCC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:493300-493629 | UAA | U | UUA | UUAUCGCCAG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:494344-496218 | UGA | U | UGC | UGCAAACCAG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:496399-497043 | UGA | U | UGU | UGUAAUGCCG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:538371-539732 | UAA | U | UUC | UUCGAAAGCG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c553660-553166 | UAA | U | UCU | UCUGGCCCCU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:638976-640541 | UAA | A | AUU | AUUUCCUUCG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c648794-647262 | UAA | G | GAA | GAAGAAGUAA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:705316-706980 | UAA | U | UCU | UCUGCUUUAU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c710688-710158 | UAA | U | UUU | UUUUAAGUUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c753691-752408 | UAA | A | ACA | ACACAUUUAA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:760745-761962 | UAA | U | UGC | UGCGGAGACA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:762237-763403 | UAG | U | UAG | UAGUUUAAGU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:763403-764272 | UAA | U | UGU | UGUCCAUUUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:778290-778811 | UAA | A | AUA | AUAUCUGUAA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c786818-786066 | UAA | G | GAG | GAGAAUUGCA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c902211-901480 | UAA | U | UCA | UCACUUUGGU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c986205-985117 | UAA | U | UUC | UUCUCUGACU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:1146590-1146763 | UAA | U | UAC | UACAUCAUUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:1150838-1151074 | UAA | U | UCA | UCACGCAUCU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:1157092-1158525 | UAA | G | GUG | GUGAACAUCU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:1194346-1195596 | UAA | U | UCC | UCCGUAAGAC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c1257035-1255944 | UAA | U | UGC | UGCCGUAGUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:1282827-1284365 | UGA | A | AAA | AAAUUCGUUC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c1297344-1294669 | UGA | U | UCG | UCGAACUCGU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:1676451-1677395 | UAA | G | GCG | GCGUGUGAAU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:1710793-1712295 | UAA | C | CUA | CUAUUCAGUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:1725861-1726268 | UAA | A | AAU | AAUUCAGGGA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c1732125-1731778 | UAA | U | UCU | UCUCCUGCCG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:1753722-1755134 | UAA | U | UAA | UAACUGAUGG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:1755445-1755681 | UAA | U | UAU | UAUUGCUUUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c1797773-1797417 | UAA | U | UAG | UAGUACCUGU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c1864496-1863750 | UAA | G | GUU | GUUGAGAUGA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c1905459-1905250 | UAA | C | CAG | CAGGUGAGCG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c2238370-2237372 | UAA | U | UCC | UCCCCCUUCA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c2300775-2298289 | UAA | U | UUG | UUGCUGAAUA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c2374841-2373984 | UGA | U | UAU | UAUUGAGAUG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:2412769-2414913 | UGA | U | UUU | UUUCACACCG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c2439627-2438407 | UAA | U | UCU | UCUCGUCAUC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c2518694-2517279 | UAA | G | GAC | GACCAUACAU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:2533856-2534365 | UAA | U | UUU | UUUCCCGGGU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c2570472-2570179 | UAA | U | UUC | UUCUUGCCGC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c2683529-2682276 | UAA | U | UGA | UGACUCAGGC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:3006786-3007997 | UAA | G | GUC | GUCCUUUCGC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c3033196-3031679 | UAA | U | UUA | UUACUCUUCA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c3141011-3139308 | UAA | U | UCU | UCUUUCUUCA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:3211069-3212910 | UAA | U | UUC | UUCCCCGAGA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c3242763-3241351 | UAA | U | UCG | UCGGUAGGCC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c3376229-3375837 | UAA | G | GCG | GCGAGGUAAC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c3440120-3439731 | UAA | G | GAC | GACUGCUAAA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:3497470-3497637 | UGA | G | GCC | GCCAGUGGAA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:3530840-3532462 | UAA | G | GUC | GUCUCUGACA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c3598806-3597952 | UAA | U | UGA | UGAUUUGAAG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:3718072-3718284 | UAA | U | UCC | UCCCUUUCAU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c3722420-3720351 | UAA | U | UCU | UCUCUGCUUA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c3782151-3781684 | UAA | U | UCC | UCCAAUCCCA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:3792010-3792942 | UAA | U | UCC | UCCCUCCCCA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c3809440-3809273 | UAA | G | GAG | GAGCUCUGCA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c3878142-3875728 | UAA | U | UCA | UCACAAAGCG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:3883099-3884745 | UAA | U | UAA | UAAAGCUAAC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c3909548-3908508 | UGA | U | UUC | UUCGGUGAGU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:3963784-3964113 | UAA | G | GUG | GUGCGCGCUG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4014454-4015215 | UAA | G | GGG | GGGAAUUUCA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4041441-4042067 | UAA | U | UUC | UUCUCUUCUC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c4056057-4054648 | UAA | U | UUC | UUCAAUGUAA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4098833-4099453 | UAA | U | UUU | UUUCGUUUUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4105575-4106537 | UAA | U | UCA | UCAUUUGCCG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c4109530-4108763 | UAA | U | UGA | UGAUUUCGGA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4173967-4175151 | UAA | G | GAC | GACCGGAUUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4175766-4176311 | UAA | U | UUG | UUGCCGAUAA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4176470-4176898 | UAA | C | CCC | CCCAGCGAUC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4176902-4177606 | UAA | G | GAA | GAAAUGGCUA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4178019-4178516 | UAA | U | UGC | UGCCUUUACG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4178583-4178948 | UAA | U | UCG | UCGCAGUUAU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4179268-4183296 | UAA | G | GCC | GCCAACCCUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4183373-4187596 | UAA | U | UUC | UUCUCGCUCA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4198304-4198576 | UAA | U | UCG | UCGUUAAUCC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c4205555-4203966 | UAA | G | GAU | GAUUGCGUGG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c4244442-4243252 | UAA | U | UCA | UCAUCGUCGA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4272148-4272684 | UAA | U | UUA | UUAAUCCCUC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c4324757-4324422 | UGA | U | UUU | UUUGUCAUUA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4369048-4370694 | UAA | U | UCC | UCCGCGCACG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4373722-4374288 | UAA | U | UUG | UUGCCCUGCA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c4378540-4377806 | UAA | U | UGC | UGCGGUUGUG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4402710-4404008 | UAA | U | UAU | UAUAACGACU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4419731-4420195 | UAA | U | UUC | UUCUGGUACG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4420209-4420859 | UAA | G | GAA | GAAGGAAUUG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4423141-4423536 | UAA | G | GGA | GGAGCGGAUA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4423862-4424089 | UAA | U | UUU | UUUCUGAUGA |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4424131-4424580 | UAA | U | UCG | UCGGUCACGG |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4426958-4427578 | UAA | U | UUC | UUCGUUAUUC |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:c4447675-4447145 | UAA | G | GCA | GCAGCGCAUU |
| ecoli | NC_000913.2 | >ref|NC_000913.2|:4550924-4552384 | UAA | U | UAU | UAUCCACCGG |