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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:8255-9208 | UGA | C | CGC | CGCGUACAGG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c10511-9945 | UAA | U | UCA | UCAUUCUUAG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:14185-15315 | UAA | U | UCG | UCGCCCUAUA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c25484-25221 | UAA | C | CCU | CCUCCCCAAA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c68197-65291 | UAA | U | UAG | UAGCGUGUCA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:112885-115590 | UAA | G | GAA | GAAUUGACUG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:127507-130170 | UAA | A | AAG | AAGCUAACUG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:130185-132077 | UAA | G | GAG | GAGGUAAAAG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:132285-133709 | UAA | G | GUA | GUAAAAGAGC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:135988-138585 | UAA | U | UUU | UUUUUCGUUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:145792-146340 | UAA | A | AAA | AAAGUCAGCG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c161301-160696 | UAA | G | GUG | GUGUGAAGUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:185084-186508 | UAA | U | UCU | UCUGUUGUUC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c189434-188610 | UAA | U | UCU | UCUCCCUCAA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:194344-195195 | UAA | U | UAA | UAAGGCUUGA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:195342-196067 | UAA | U | UUA | UUAUCAAAAA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:196217-196774 | UAA | U | UUC | UUCCCGUGAU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:203826-204311 | UGA | U | UUU | UUUCUUGAAC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:211965-212924 | UAA | G | GUA | GUAAUGCCUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c222107-220389 | UAA | U | UUC | UUCGCAAAAG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c437671-436562 | UAA | U | UCU | UCUUUUCAAC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:498904-499374 | UAA | U | UUA | UUAAAAUUUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:521188-522486 | UGA | A | AAU | AAUUAGUAAG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:523480-524754 | UAA | U | UUU | UUUACGCAGC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:527505-527777 | UAA | U | UUA | UUAACCAUUC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:527969-529840 | UAA | G | GCG | GCGUUGUCCC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:557310-557861 | UAA | U | UCC | UCCUGAAGCC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:559974-560303 | UAA | U | UUA | UUAUCGCCAG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:563073-563717 | UGA | U | UGC | UGCAAACCAG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:631349-632239 | UAA | U | UCA | UCAAGCCGCA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c646583-646089 | UAG | A | AAA | AAAGGCAUGU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:720859-722454 | UAA | G | GUU | GUUCCGCAAU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c730707-729175 | UAA | G | GAA | GAAGAAGUAA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c791272-790742 | UAA | U | UUU | UUUUAAGUUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:839821-841038 | UAA | A | ACA | ACACAUUAAA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:841132-842298 | UAG | U | UAG | UAGUUUAAGU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:842298-843167 | UAA | U | UGU | UGUCCAUUUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:859202-860341 | UAA | A | AUA | AUAUCUGUAA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:865146-865667 | UAA | G | GUA | GUAAGGAGCU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c873115-872363 | UAA | G | GAG | GAGAAUUGCA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c1033244-1032513 | UAA | U | UCA | UCACUUUGGU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:1103991-1104569 | UGA | U | UCC | UCCACAUCCC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:1104638-1105213 | UGA | U | UCG | UCGAAAAGUA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:1159763-1161055 | UAA | A | AAG | AAGACGCUGA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c1172420-1170138 | UAA | U | UAC | UACCCAAUUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c1205676-1204588 | UAA | U | UUC | UUCUCUGACU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c1431649-1431089 | UAG | A | AAA | AAAGCGAAGA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:1499598-1500176 | UGA | U | UCC | UCCACAUCCC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:1500245-1500820 | UGA | U | UCG | UCGAAAAGUA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:1548672-1549130 | UAA | A | AAG | AAGACGCUGA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:1591548-1591721 | UAA | U | UAC | UACAUCAUCU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:1595796-1596032 | UAA | U | UCA | UCACGCGUCU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c1697684-1696314 | UAA | G | GUG | GUGAACAUCU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:1817023-1820766 | UAA | U | UCA | UCACUACAUG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:1820763-1822301 | UGA | A | AAA | AAAUUCGUUC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c1829903-1829490 | UGA | U | UCG | UCGAACUCGU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:2108135-2109124 | UAA | C | CCG | CCGGACACGA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:2190542-2191048 | UAA | U | UCU | UCUUGCCGCU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:2235429-2236217 | UAA | G | GUU | GUUAAUAUGC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c2259614-2258742 | UAA | U | UCG | UCGUUCUGUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:2402757-2403164 | UAA | A | AAU | AAUUCAGGGA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c2409021-2408674 | UAA | U | UCU | UCUCCUGCCG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:2432329-2432565 | UAA | U | UAU | UAUUGCUUUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c2472860-2470473 | UAA | U | UAG | UAGUACCUGU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c2543280-2542534 | UAA | G | GUU | GUUGAGAUGA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c2584471-2584262 | UAA | C | CAG | CAGGUGAGCG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c3046609-3045611 | UAA | U | UCC | UCCCCCUUCA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c3117005-3115902 | UAA | U | UUG | UUGCUGAAUA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:3144429-3145559 | UGA | U | UAU | UAUUGAGAUG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c3196297-3193565 | UGA | U | UGG | UGGCUCGCGU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:3210873-3213017 | UGA | U | UUU | UUUCACACCG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c3306336-3306010 | UAA | C | CCU | CCUCGUCAUC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:3330059-3330568 | UAA | U | UUU | UUUCCCGGGU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c3336793-3335777 | UAA | U | UUC | UUCUUGCUGC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c3686173-3685379 | UAA | A | AAU | AAUCUAAUGA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:3719274-3720641 | UAA | G | GUC | GUCCUUUCGC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:3814401-3815612 | UAA | U | UCG | UCGCUCUCCA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c3840631-3839114 | UAA | U | UUA | UUACUCUUCA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:3905499-3906092 | UAA | U | UCU | UCUUUCUUCA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c3909634-3908588 | UAA | A | AUU | AUUACCGCCG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:4019893-4021734 | UAA | U | UUC | UUCCCCGAGA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c4117624-4115684 | UAA | U | UCG | UCGGUAGGCC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:4286584-4286751 | UAA | U | UGU | UGUUUUAACG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c4293056-4292052 | UAA | G | GUC | GUCUCUGACA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c4387251-4386397 | UAA | U | UGA | UGAGUAUGUC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:4534852-4535064 | UAA | U | UCC | UCCCUUUCAU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c4538717-4537806 | UAA | U | UCU | UCUCUGCUUA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c4607160-4606135 | UAA | U | UCC | UCCCUCCCCA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c4624259-4624092 | UAA | G | GAG | GAGCUCUGCA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:4739552-4739692 | UAA | U | UCA | UCACAAAGCG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:4740292-4741938 | UAA | U | UAA | UAAAGCUAAC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c4764055-4763282 | UGA | U | UUC | UUCGGUGAGU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:4820401-4821876 | UAA | A | AUA | AUACAAAAAA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c4856480-4856160 | UAA | U | UAG | UAGCGAUUCA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:4908134-4908760 | UAA | U | UUC | UUCUCUUCUC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:4922970-4924793 | UAA | U | UUC | UUCAAUGUAA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:4969534-4970154 | UAA | U | UUU | UUUCGUUUUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:4976276-4977238 | UAA | U | UCA | UCAUUUGCCG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c4980230-4979463 | UAA | U | UGA | UGAUUUCGGA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5019272-5019592 | UAA | G | GAC | GACCGGAUUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5055506-5056051 | UAA | G | GUU | GUUCUUCUCC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5056210-5056638 | UAA | C | CCC | CCCAGCGAUC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5056642-5057346 | UAA | G | GAA | GAAAUGGCUA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5057638-5058135 | UAA | U | UGC | UGCCUUUACG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5058202-5058567 | UAA | U | UCG | UCGCAGUUAU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5077852-5078124 | UAA | G | GCC | GCCAACCCUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c5085082-5083493 | UAA | G | GAU | GAUUGCGUGG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c5129679-5128489 | UAA | U | UCA | UCAUCGUUCA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5142405-5142614 | UAA | U | UAG | UAGCAAAACC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5157257-5157793 | UAA | U | UUA | UUAAUCCCUC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c5211167-5210832 | UGA | U | UUU | UUUGUCAUUA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c5264782-5264048 | UAA | U | UCC | UCCUCGCACG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c5303344-5302274 | UAA | U | UAU | UAUAACGACU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5305899-5306549 | UAA | G | GAA | GAAGGAAUUG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5308830-5309225 | UAA | G | GGA | GGAGCGGAUA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5309551-5309778 | UAA | U | UUU | UUUCUGAUGA |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5309820-5310269 | UAA | U | UCG | UCGGUCACGG |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c5335118-5334588 | UAA | U | UUC | UUCGUUAUUC |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:c5369237-5366382 | UAA | U | UUA | UUAAUUGAUU |
| ecoli3 | NC_002655.2 | >ref|NC_002655.2|:5437727-5439187 | UAA | U | UAC | UACCCACCGG |