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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| neut | NC_008344.1 | >ref|NC_008344.1|:244735-245082 | UAG | C | CAA | CAAAAAAUAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:c281618-280458 | UAA | G | GUU | GUUAGAUUUA |
| neut | NC_008344.1 | >ref|NC_008344.1|:283487-283759 | UGA | A | ACA | ACAUAUCAAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:283799-284272 | UAA | A | AUU | AUUAUUGAAU |
| neut | NC_008344.1 | >ref|NC_008344.1|:284822-286363 | UAA | A | AUG | AUGGCUGAAG |
| neut | NC_008344.1 | >ref|NC_008344.1|:304677-304889 | UAA | C | CCC | CCCAUGGCAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:310522-310725 | UGA | U | UUC | UUCCAUUUGU |
| neut | NC_008344.1 | >ref|NC_008344.1|:313688-314290 | UGA | U | UUA | UUAAGACUUG |
| neut | NC_008344.1 | >ref|NC_008344.1|:458134-458760 | UAA | A | AAU | AAUCUGGUGG |
| neut | NC_008344.1 | >ref|NC_008344.1|:469758-470234 | UAG | G | GUA | GUACGGUAAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:474817-475071 | UGA | G | GUA | GUAUCAGUCU |
| neut | NC_008344.1 | >ref|NC_008344.1|:576676-578766 | UAA | U | UGA | UGAAUCUGCU |
| neut | NC_008344.1 | >ref|NC_008344.1|:581095-581715 | UAA | A | AGC | AGCUAUUCAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:581712-582047 | UGA | A | AAA | AAAUUAUCAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:582047-582880 | UAA | U | UGA | UGACACUUAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:582885-583169 | UAA | A | AAG | AAGUAUGAGC |
| neut | NC_008344.1 | >ref|NC_008344.1|:583549-584196 | UAG | G | GAU | GAUUAUAUAU |
| neut | NC_008344.1 | >ref|NC_008344.1|:584281-584697 | UAA | G | GCA | GCAAAAGCUU |
| neut | NC_008344.1 | >ref|NC_008344.1|:584895-585149 | UGA | U | UUU | UUUCUUAAUG |
| neut | NC_008344.1 | >ref|NC_008344.1|:585609-585932 | UGA | A | AUA | AUAUAACCCU |
| neut | NC_008344.1 | >ref|NC_008344.1|:585948-586487 | UAA | G | GGA | GGAUAGAAGA |
| neut | NC_008344.1 | >ref|NC_008344.1|:586497-586802 | UAA | A | AGG | AGGAAUAAUG |
| neut | NC_008344.1 | >ref|NC_008344.1|:586876-587271 | UAA | A | AGU | AGUUAAGCUU |
| neut | NC_008344.1 | >ref|NC_008344.1|:587284-587823 | UGA | G | GGU | GGUAAUUUAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:587839-588201 | UAA | U | UAU | UAUAAGGAUA |
| neut | NC_008344.1 | >ref|NC_008344.1|:588218-588751 | UAA | A | AAU | AAUAAAGGUA |
| neut | NC_008344.1 | >ref|NC_008344.1|:588757-588942 | UGA | U | UUU | UUUAAAUGGA |
| neut | NC_008344.1 | >ref|NC_008344.1|:589396-590718 | UAA | A | AGG | AGGUGAGACU |
| neut | NC_008344.1 | >ref|NC_008344.1|:591134-591493 | UAG | U | UUG | UUGGGUUGUG |
| neut | NC_008344.1 | >ref|NC_008344.1|:591533-591922 | UAA | U | UUU | UUUUUUCGCC |
| neut | NC_008344.1 | >ref|NC_008344.1|:591937-592563 | UAA | G | GAA | GAAGGAGAAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:592590-593597 | UAA | U | UCG | UCGGCAUUUU |
| neut | NC_008344.1 | >ref|NC_008344.1|:593584-593976 | UAA | U | UGG | UGGAUUGCGA |
| neut | NC_008344.1 | >ref|NC_008344.1|:845751-846059 | UAA | U | UUA | UUAAUCGUUG |
| neut | NC_008344.1 | >ref|NC_008344.1|:847853-848137 | UAA | A | AUU | AUUCGAUUGC |
| neut | NC_008344.1 | >ref|NC_008344.1|:926264-927337 | UAA | A | AGU | AGUAAUUGUU |
| neut | NC_008344.1 | >ref|NC_008344.1|:927490-928437 | UGA | C | CAC | CACUGAGAAU |
| neut | NC_008344.1 | >ref|NC_008344.1|:937387-938196 | UAA | A | ACC | ACCCAGUUUG |
| neut | NC_008344.1 | >ref|NC_008344.1|:938212-939480 | UAA | C | CAG | CAGCAGAUUU |
| neut | NC_008344.1 | >ref|NC_008344.1|:949563-950183 | UGA | U | UUU | UUUUACUUUC |
| neut | NC_008344.1 | >ref|NC_008344.1|:953315-955720 | UGA | C | CAC | CACGCUCUAU |
| neut | NC_008344.1 | >ref|NC_008344.1|:956860-957348 | UAA | G | GAA | GAACCUGGAU |
| neut | NC_008344.1 | >ref|NC_008344.1|:992145-992387 | UAA | A | ACA | ACAUUUAGAU |
| neut | NC_008344.1 | >ref|NC_008344.1|:994769-995647 | UAA | G | GAU | GAUGAAUCAU |
| neut | NC_008344.1 | >ref|NC_008344.1|:c999033-998716 | UAA | A | AAA | AAAUGGAAGC |
| neut | NC_008344.1 | >ref|NC_008344.1|:1108863-1109012 | UAA | U | UAA | UAAUGUGUCC |
| neut | NC_008344.1 | >ref|NC_008344.1|:1127903-1128403 | UAA | U | UAA | UAAUGUGUCC |
| neut | NC_008344.1 | >ref|NC_008344.1|:1153550-1154254 | UAG | U | UUU | UUUAAUCAUU |
| neut | NC_008344.1 | >ref|NC_008344.1|:1154902-1155330 | UGA | A | AGA | AGAUUCUUCA |
| neut | NC_008344.1 | >ref|NC_008344.1|:1177235-1177531 | UAG | U | UUU | UUUUAUUUUU |
| neut | NC_008344.1 | >ref|NC_008344.1|:1184710-1184844 | UAG | A | AUG | AUGACUGAAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:c1251408-1250944 | UAA | A | AUG | AUGGAAUGAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:1609903-1610091 | UAA | U | UCG | UCGCUCGUAA |
| neut | NC_008344.1 | >ref|NC_008344.1|:c1713592-1713350 | UAA | U | UGC | UGCGCAUUCU |
| neut | NC_008344.1 | >ref|NC_008344.1|:c2479885-2479583 | UAG | A | AUG | AUGACAUAUC |