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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| paer | NC_002516.2 | >ref|NC_002516.2|:613338-614402 | UAA | G | GAC | GACCGCGCCG |
| paer | NC_002516.2 | >ref|NC_002516.2|:913086-913571 | UAA | G | GCG | GCGCCUUCGU |
| paer | NC_002516.2 | >ref|NC_002516.2|:1183058-1184524 | UGA | U | UCG | UCGGCGUUCA |
| paer | NC_002516.2 | >ref|NC_002516.2|:c1690513-1689557 | UAA | G | GCC | GCCCGGGAAC |
| paer | NC_002516.2 | >ref|NC_002516.2|:1724244-1727075 | UAA | G | GGG | GGGUGCCCGC |
| paer | NC_002516.2 | >ref|NC_002516.2|:1728416-1729852 | UAA | C | CGC | CGCCUACGCG |
| paer | NC_002516.2 | >ref|NC_002516.2|:1730181-1731347 | UGA | G | GUG | GUGAUCCGAC |
| paer | NC_002516.2 | >ref|NC_002516.2|:1731347-1732234 | UAA | U | UGA | UGAGCGUCCU |
| paer | NC_002516.2 | >ref|NC_002516.2|:1921174-1922226 | UGA | U | UUU | UUUCCCGGGU |
| paer | NC_002516.2 | >ref|NC_002516.2|:c1937644-1935035 | UAA | U | UCG | UCGGCUGAGC |
| paer | NC_002516.2 | >ref|NC_002516.2|:1958759-1959031 | UGA | U | UUC | UUCGUUCCUC |
| paer | NC_002516.2 | >ref|NC_002516.2|:2977756-2979351 | UAA | G | GCG | GCGUCUUUUU |
| paer | NC_002516.2 | >ref|NC_002516.2|:c3311721-3310792 | UAA | G | GGA | GGAACAGGGG |
| paer | NC_002516.2 | >ref|NC_002516.2|:c3549789-3548110 | UGA | G | GUG | GUGACAGGCU |
| paer | NC_002516.2 | >ref|NC_002516.2|:c4094036-4093167 | UAA | C | CUU | CUUGUAGUUC |
| paer | NC_002516.2 | >ref|NC_002516.2|:c4266901-4266470 | UGA | G | GCC | GCCCAGCUCG |
| paer | NC_002516.2 | >ref|NC_002516.2|:c4754379-4753990 | UGA | U | UCC | UCCGCCGCUG |
| paer | NC_002516.2 | >ref|NC_002516.2|:c5273471-5272455 | UAA | U | UUC | UUCAUUACUC |
| paer | NC_002516.2 | >ref|NC_002516.2|:c5536131-5535685 | UAA | G | GCC | GCCGCGGGGA |
| paer | NC_002516.2 | >ref|NC_002516.2|:c5687320-5687105 | UAA | U | UAC | UACCUGCGCC |
| paer | NC_002516.2 | >ref|NC_002516.2|:c5846009-5844468 | UGA | U | UCC | UCCACCCUUU |
| paer | NC_002516.2 | >ref|NC_002516.2|:c6249654-6248278 | UGA | C | CCC | CCCGGGCGCG |