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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:623313-624377 | UAA | G | GAC | GACCGCGCCG |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:741311-742504 | UAA | G | GCG | GCGCCUUCGU |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:743709-744140 | UAA | U | UAU | UAUCGGUUGA |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:744140-744835 | UAA | U | UGG | UGGCUAAGCU |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:745613-745981 | UAA | G | GUG | GUGAAAUCGU |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:746203-750276 | UAA | G | GCG | GCGACGACCU |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:750342-754541 | UAA | C | CAC | CACGUGACGC |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:755665-757785 | UAA | G | GCA | GCAUCAACGA |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:757816-759009 | UGA | U | UUC | UUCAGCCCUU |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:763894-764160 | UAA | U | UCG | UCGCUGAUCC |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:765452-765757 | UAA | G | GGA | GGACUAGGGG |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:766351-766884 | UAA | U | UCG | UCGCAGCGAA |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:767249-767749 | UAG | G | GGC | GGCAUAGCAA |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:767932-768366 | UAA | C | CCA | CCAUGGCAAC |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:769971-770327 | UAA | A | AUG | AUGGCUAAGC |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:770346-770735 | UAA | U | UCG | UCGCGUAGGA |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:770752-771372 | UAA | U | UAG | UAGGAGACAG |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:772440-772829 | UAA | G | GGG | GGGCUAGAAA |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:c1251990-1251175 | UAA | G | GGC | GGCAUCUGCU |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:c1453275-1452241 | UGA | U | UCG | UCGAGCGUGG |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:c1893556-1893347 | UAA | C | CAA | CAAAGACGGU |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:c2236447-2233274 | UAA | G | GUC | GUCUCUGAUC |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:c3713499-3712447 | UGA | U | UCC | UCCAGCGACG |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:c4466873-4465407 | UGA | U | UCC | UCCCUCCCGC |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:5525979-5526674 | UAA | U | UUC | UUCAUUACUC |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:c5545403-5544387 | UGA | G | GCC | GCCAGACCCG |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:c5807507-5807061 | UAA | G | GCC | GCCGCGGGGA |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:c5956123-5954855 | UAA | U | UAC | UACCUGCGCC |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:c6143833-6143444 | UGA | U | UCC | UCCACCCUUU |
| paer1 | NC_008463.1 | >ref|NC_008463.1|:c6455261-6454656 | UGA | C | CCC | CCCGGGCGCG |