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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| patl | NC_008228.1 | >ref|NC_008228.1|:60062-60217 | UAA | G | GGA | GGAACACAGA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c85811-85401 | UAA | U | UUA | UUAAUACUUG |
| patl | NC_008228.1 | >ref|NC_008228.1|:166737-167270 | UAG | U | UAA | UAAAUGAAGA |
| patl | NC_008228.1 | >ref|NC_008228.1|:176706-177308 | UAA | U | UUU | UUUUCAUAUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:252198-252932 | UAA | U | UUA | UUAAUACCAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:265252-265473 | UAA | G | GUG | GUGCUUAACU |
| patl | NC_008228.1 | >ref|NC_008228.1|:291321-292427 | UAA | G | GCC | GCCAAUCCUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c317028-316735 | UAA | U | UUA | UUAGUUCGUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:407392-407778 | UAG | U | UCC | UCCUAGGGCA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c419558-419352 | UAA | U | UAU | UAUCAGGUAU |
| patl | NC_008228.1 | >ref|NC_008228.1|:527790-529001 | UAA | U | UUA | UUAACUGAUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:528991-529752 | UAA | A | AAA | AAAAGAAACA |
| patl | NC_008228.1 | >ref|NC_008228.1|:530401-531009 | UGA | G | GAG | GAGACUAGAC |
| patl | NC_008228.1 | >ref|NC_008228.1|:531034-532260 | UAA | U | UCG | UCGAAACCGA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c540127-538040 | UAA | U | UUA | UUAGCUAUCA |
| patl | NC_008228.1 | >ref|NC_008228.1|:547965-548603 | UAA | C | CAA | CAAGAGAGGG |
| patl | NC_008228.1 | >ref|NC_008228.1|:548622-549227 | UAA | C | CGU | CGUCUGGGGA |
| patl | NC_008228.1 | >ref|NC_008228.1|:549224-549526 | UGA | U | UUA | UUAACGAAGA |
| patl | NC_008228.1 | >ref|NC_008228.1|:549541-550365 | UAA | G | GAA | GAAGGGGACU |
| patl | NC_008228.1 | >ref|NC_008228.1|:550667-550999 | UAA | C | CAG | CAGCGAGGAU |
| patl | NC_008228.1 | >ref|NC_008228.1|:551710-552120 | UAG | G | GAG | GAGAAGAUAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:552120-552311 | UAA | U | UGA | UGAAAGCCAC |
| patl | NC_008228.1 | >ref|NC_008228.1|:552311-552562 | UAA | U | UGA | UGACUGAACA |
| patl | NC_008228.1 | >ref|NC_008228.1|:568956-570224 | UAA | U | UCA | UCAGUUUUAG |
| patl | NC_008228.1 | >ref|NC_008228.1|:625702-628728 | UAA | G | GCA | GCAACGCUUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:630694-631629 | UAA | U | UCA | UCAUUAAAUG |
| patl | NC_008228.1 | >ref|NC_008228.1|:c641672-640941 | UAA | U | UUC | UUCAUUUUCC |
| patl | NC_008228.1 | >ref|NC_008228.1|:680028-680729 | UAA | G | GAA | GAAAUGGCUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:681668-682039 | UAA | U | UUU | UUUUAGCCUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:682317-686345 | UAA | U | UCU | UCUGUCUAAC |
| patl | NC_008228.1 | >ref|NC_008228.1|:686436-690623 | UAA | G | GCC | GCCGCGUCUG |
| patl | NC_008228.1 | >ref|NC_008228.1|:690833-691207 | UAA | A | AAA | AAAAUAAGAU |
| patl | NC_008228.1 | >ref|NC_008228.1|:691284-691754 | UAA | C | CGG | CGGUUCUCCG |
| patl | NC_008228.1 | >ref|NC_008228.1|:693936-695120 | UAA | U | UAA | UAAGAGAAAG |
| patl | NC_008228.1 | >ref|NC_008228.1|:701738-702358 | UAA | U | UUA | UUACUAGCAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:721719-722087 | UAA | C | CAC | CACGCAUUUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:763830-764555 | UAA | C | CCU | CCUUAUUUUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c854101-852899 | UAA | U | UUU | UUUCUGAAUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c1159827-1158364 | UAA | A | ACC | ACCCACUUUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c1171815-1170577 | UAA | U | UUC | UUCAUCGUUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:1192815-1193354 | UAA | U | UAA | UAAUUGGAGA |
| patl | NC_008228.1 | >ref|NC_008228.1|:1193365-1193670 | UAA | G | GGG | GGGUAGGGUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:1193683-1194075 | UAA | G | GGA | GGAGUAGCUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:1194086-1194619 | UAA | G | GGG | GGGGAUAAAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:1194995-1195498 | UAG | G | GUA | GUAGGUGAUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:1195499-1195687 | UAA | U | UUG | UUGAACAUGG |
| patl | NC_008228.1 | >ref|NC_008228.1|:1197717-1198073 | UAA | C | CAG | CAGAUGCAUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:1198086-1198478 | UAA | G | GCG | GCGGGGAUUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:1198503-1199123 | UAA | U | UCG | UCGACGGACU |
| patl | NC_008228.1 | >ref|NC_008228.1|:1199146-1200135 | UAA | A | AGC | AGCUUAAAGA |
| patl | NC_008228.1 | >ref|NC_008228.1|:1200173-1200574 | UAA | U | UCA | UCAGAUUUAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c1218024-1216153 | UAA | A | AAA | AAAUUCCUAC |
| patl | NC_008228.1 | >ref|NC_008228.1|:1225207-1225560 | UAA | U | UAU | UAUAUUUCAU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c1243491-1241650 | UAG | U | UGU | UGUUACCUAG |
| patl | NC_008228.1 | >ref|NC_008228.1|:1276355-1276924 | UAA | C | CCA | CCAAUUUGCA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c1455047-1454211 | UAA | C | CAC | CACUAGGCGU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c1483102-1482323 | UAA | A | AAU | AAUGAGUUAC |
| patl | NC_008228.1 | >ref|NC_008228.1|:1487551-1487931 | UAG | U | UAU | UAUUUGAAUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:1498507-1499238 | UAA | A | ACG | ACGUUAAACG |
| patl | NC_008228.1 | >ref|NC_008228.1|:1499371-1500243 | UAA | U | UCA | UCAGCCCCUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:1508631-1509146 | UAA | U | UUG | UUGCGCCAUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:1565337-1566593 | UAA | G | GUC | GUCCAACAGG |
| patl | NC_008228.1 | >ref|NC_008228.1|:1582254-1582730 | UAG | G | GUU | GUUUUAGUUC |
| patl | NC_008228.1 | >ref|NC_008228.1|:c1625144-1624890 | UAG | G | GUG | GUGAAACCAG |
| patl | NC_008228.1 | >ref|NC_008228.1|:c1680753-1680172 | UAA | U | UCA | UCAGCCAAUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c1681729-1681535 | UAA | C | CAA | CAAAGCCUGU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c1720185-1718674 | UAA | U | UUC | UUCAACGCUG |
| patl | NC_008228.1 | >ref|NC_008228.1|:1854714-1854995 | UAA | U | UUC | UUCAAGCUUG |
| patl | NC_008228.1 | >ref|NC_008228.1|:1882481-1882852 | UAG | U | UUG | UUGCUAAGAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:1884691-1884942 | UAA | A | AAG | AAGAAUUACC |
| patl | NC_008228.1 | >ref|NC_008228.1|:1886290-1886652 | UAA | U | UUG | UUGCAAUUGC |
| patl | NC_008228.1 | >ref|NC_008228.1|:1898622-1898927 | UAA | U | UAU | UAUUAAUUUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:1941283-1943394 | UAG | C | CCA | CCACUAACAC |
| patl | NC_008228.1 | >ref|NC_008228.1|:c1945437-1944442 | UAA | U | UCG | UCGUUUAGCA |
| patl | NC_008228.1 | >ref|NC_008228.1|:2028594-2031203 | UAG | G | GGU | GGUCACCAAG |
| patl | NC_008228.1 | >ref|NC_008228.1|:2032794-2033063 | UAA | U | UUC | UUCGCCAAUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:2045622-2045807 | UAA | U | UUC | UUCGACAGCU |
| patl | NC_008228.1 | >ref|NC_008228.1|:2058701-2061307 | UAA | U | UCA | UCAACGUUUG |
| patl | NC_008228.1 | >ref|NC_008228.1|:2068641-2069198 | UAG | G | GUA | GUAUACCUAU |
| patl | NC_008228.1 | >ref|NC_008228.1|:2141841-2142044 | UAA | U | UAA | UAACGCCGCG |
| patl | NC_008228.1 | >ref|NC_008228.1|:c2154543-2153263 | UAG | U | UAA | UAAGGUUGCC |
| patl | NC_008228.1 | >ref|NC_008228.1|:2155672-2157441 | UAA | A | AUG | AUGAGUAUUC |
| patl | NC_008228.1 | >ref|NC_008228.1|:2157456-2158166 | UAA | G | GAG | GAGGAGUUAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:2161176-2162663 | UAG | U | UUU | UUUUUAAUUC |
| patl | NC_008228.1 | >ref|NC_008228.1|:2162787-2163956 | UAA | U | UAG | UAGGAUCUAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:2163953-2164825 | UGA | G | GCG | GCGUACUAAU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c2182031-2181636 | UAA | G | GCU | GCUUGCUUAG |
| patl | NC_008228.1 | >ref|NC_008228.1|:2322012-2323196 | UAA | U | UCU | UCUUAUCGAC |
| patl | NC_008228.1 | >ref|NC_008228.1|:2323244-2325046 | UAA | A | AUU | AUUUUAGGCG |
| patl | NC_008228.1 | >ref|NC_008228.1|:c2327930-2327535 | UAA | C | CAC | CACUUCACUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c2397937-2397767 | UAA | A | AUG | AUGCCGGUUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:2416360-2418279 | UAA | U | UUC | UUCGUGGGCU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c2476644-2476051 | UAA | U | UUU | UUUUGUUGAC |
| patl | NC_008228.1 | >ref|NC_008228.1|:2602822-2603244 | UAA | G | GGA | GGAGUGAACA |
| patl | NC_008228.1 | >ref|NC_008228.1|:2662433-2662717 | UAA | A | AUA | AUAGUCUCUG |
| patl | NC_008228.1 | >ref|NC_008228.1|:2690697-2693135 | UAG | U | UAA | UAAAGCGUUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c2696222-2695641 | UAA | U | UCA | UCACCAGCCA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c2769815-2767476 | UAA | A | ACA | ACAUUUCGGU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c2892626-2890395 | UAG | A | AAU | AAUACAGUAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:2991575-2992705 | UAA | U | UCG | UCGUUAAUGU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c2997256-2995517 | UAA | A | ACA | ACAUCAAUGG |
| patl | NC_008228.1 | >ref|NC_008228.1|:3114367-3115008 | UAA | A | AAA | AAAGGAAGAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:3115643-3116734 | UAA | G | GUU | GUUGUUUGUC |
| patl | NC_008228.1 | >ref|NC_008228.1|:c3137455-3135083 | UAG | C | CUA | CUAUUUUUAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:3475211-3477607 | UAA | G | GGA | GGAAAGCCCA |
| patl | NC_008228.1 | >ref|NC_008228.1|:3492356-3493255 | UAA | C | CCG | CCGUAAACGU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c3506556-3504634 | UAG | U | UGG | UGGUUCCGUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c3766266-3765643 | UAG | U | UAU | UAUCGGCAGC |
| patl | NC_008228.1 | >ref|NC_008228.1|:3825927-3826190 | UAG | U | UAG | UAGAUGUUUC |
| patl | NC_008228.1 | >ref|NC_008228.1|:c3841895-3841002 | UAA | U | UAU | UAUCGGUUCA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c3875657-3874320 | UAA | G | GUU | GUUUUAUUAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c3995777-3993777 | UAA | G | GAC | GACCUAUAUC |
| patl | NC_008228.1 | >ref|NC_008228.1|:4019041-4020465 | UAA | C | CCA | CCAUUGAGGA |
| patl | NC_008228.1 | >ref|NC_008228.1|:4020808-4022889 | UAA | U | UAU | UAUUUUUUAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:4026147-4026884 | UAA | U | UCA | UCAAUGGUCG |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4085450-4083105 | UAA | A | ACA | ACAACGGUCA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4109946-4107334 | UAA | U | UUC | UUCAUGACCA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4216399-4213670 | UAA | G | GCC | GCCUCAGGCU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4303036-4301753 | UAA | U | UUC | UUCUCACGAC |
| patl | NC_008228.1 | >ref|NC_008228.1|:4353504-4354013 | UAA | G | GCA | GCAGAAAAUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4355603-4355160 | UAA | G | GUA | GUACUUAGCC |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4374848-4374453 | UAA | U | UAG | UAGAAACAGC |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4416529-4415783 | UAA | U | UCA | UCAAACACUC |
| patl | NC_008228.1 | >ref|NC_008228.1|:4500742-4500948 | UAA | A | AAA | AAAAUCUAAU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4504149-4503892 | UAA | U | UUA | UUACAGACUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:4521858-4523504 | UAA | U | UCA | UCAACCGUUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:4558711-4558920 | UAA | A | AUC | AUCAUGUUUC |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4591690-4591160 | UAA | A | ACC | ACCUUGUUAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4774068-4773736 | UAA | C | CUC | CUCAGUAAUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4810925-4809741 | UAA | U | UCU | UCUAUUUAUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4874259-4873981 | UAA | U | UUA | UUACUAGCAA |
| patl | NC_008228.1 | >ref|NC_008228.1|:4948630-4950048 | UAA | C | CUU | CUUAUUCGUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:c4970934-4970368 | UAA | G | GUU | GUUAACGGCU |
| patl | NC_008228.1 | >ref|NC_008228.1|:5013050-5015893 | UAA | C | CCC | CCCAGCUUAG |
| patl | NC_008228.1 | >ref|NC_008228.1|:c5045172-5044957 | UAA | C | CAU | CAUCUAUAUU |
| patl | NC_008228.1 | >ref|NC_008228.1|:5097307-5097885 | UAA | U | UUA | UUAAGUGCUG |
| patl | NC_008228.1 | >ref|NC_008228.1|:5122047-5123531 | UAA | U | UUA | UUAGUCGUUA |
| patl | NC_008228.1 | >ref|NC_008228.1|:c5134528-5133104 | UAA | C | CCC | CCCUUCUAGU |