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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| pput | NC_002947.3 | >ref|NC_002947.3|:263249-264691 | UGA | U | UCA | UCAGGUGUGU |
| pput | NC_002947.3 | >ref|NC_002947.3|:264874-266151 | UGA | U | UAG | UAGCACGGUA |
| pput | NC_002947.3 | >ref|NC_002947.3|:c408003-406363 | UGA | U | UGU | UGUGACGCGC |
| pput | NC_002947.3 | >ref|NC_002947.3|:535133-535564 | UAA | G | GUA | GUAGUUGAUU |
| pput | NC_002947.3 | >ref|NC_002947.3|:535564-536259 | UAA | U | UGG | UGGCUAAGCU |
| pput | NC_002947.3 | >ref|NC_002947.3|:537035-537400 | UAA | G | GAA | GAACAUGGCG |
| pput | NC_002947.3 | >ref|NC_002947.3|:537621-541694 | UAA | U | UCU | UCUCGACCUU |
| pput | NC_002947.3 | >ref|NC_002947.3|:541759-545958 | UAA | C | CAC | CACGUGACGC |
| pput | NC_002947.3 | >ref|NC_002947.3|:546170-546541 | UAA | G | GUA | GUACAGGGCA |
| pput | NC_002947.3 | >ref|NC_002947.3|:547149-549296 | UAA | U | UCG | UCGGUCGUUU |
| pput | NC_002947.3 | >ref|NC_002947.3|:549324-550517 | UAA | U | UCC | UCCCCUUUAG |
| pput | NC_002947.3 | >ref|NC_002947.3|:551018-551686 | UAA | U | UCA | UCACUCGACC |
| pput | NC_002947.3 | >ref|NC_002947.3|:551699-552301 | UAA | G | GGG | GGGGAAACUG |
| pput | NC_002947.3 | >ref|NC_002947.3|:552612-553436 | UGA | A | ACC | ACCAGGAACG |
| pput | NC_002947.3 | >ref|NC_002947.3|:555392-555658 | UAA | C | CUA | CUAGAGGGAU |
| pput | NC_002947.3 | >ref|NC_002947.3|:556062-556376 | UAA | G | GGG | GGGCUAAGGG |
| pput | NC_002947.3 | >ref|NC_002947.3|:557869-558402 | UGA | A | ACA | ACACUGCUAG |
| pput | NC_002947.3 | >ref|NC_002947.3|:558767-559267 | UAG | G | GGC | GGCCUAGUAA |
| pput | NC_002947.3 | >ref|NC_002947.3|:561493-561849 | UGA | U | UCA | UCAUGGCAAC |
| pput | NC_002947.3 | >ref|NC_002947.3|:561868-562257 | UAA | U | UCG | UCGCCCAGGA |
| pput | NC_002947.3 | >ref|NC_002947.3|:562273-562893 | UAA | U | UCA | UCAGGAGACA |
| pput | NC_002947.3 | >ref|NC_002947.3|:563960-564346 | UAA | G | GGG | GGGCUAGAAA |
| pput | NC_002947.3 | >ref|NC_002947.3|:603694-604170 | UAA | G | GAC | GACGUUCUGU |
| pput | NC_002947.3 | >ref|NC_002947.3|:c649675-648320 | UGA | U | UUA | UUAGCGACGA |
| pput | NC_002947.3 | >ref|NC_002947.3|:c707346-707068 | UAA | G | GGG | GGGAAGUAGA |
| pput | NC_002947.3 | >ref|NC_002947.3|:801514-802740 | UAA | U | UGC | UGCCCUGGAG |
| pput | NC_002947.3 | >ref|NC_002947.3|:c838695-838042 | UGA | U | UCG | UCGGUUGCAG |
| pput | NC_002947.3 | >ref|NC_002947.3|:901610-902572 | UGA | U | UUU | UUUUCUGCGC |
| pput | NC_002947.3 | >ref|NC_002947.3|:c976136-975318 | UGA | U | UCU | UCUGAGAAAA |
| pput | NC_002947.3 | >ref|NC_002947.3|:987012-988121 | UAA | G | GCG | GCGAAAGCUU |
| pput | NC_002947.3 | >ref|NC_002947.3|:1175568-1177037 | UGA | C | CAC | CACACAGAAU |
| pput | NC_002947.3 | >ref|NC_002947.3|:1243107-1243709 | UGA | G | GGC | GGCUUCCAGC |
| pput | NC_002947.3 | >ref|NC_002947.3|:1246968-1248185 | UAA | U | UUG | UUGCUGCGUG |
| pput | NC_002947.3 | >ref|NC_002947.3|:c1257128-1256919 | UGA | U | UUG | UUGCUGGCGU |
| pput | NC_002947.3 | >ref|NC_002947.3|:1503194-1503622 | UAA | G | GCA | GCAGUCCCCG |
| pput | NC_002947.3 | >ref|NC_002947.3|:1503637-1504029 | UAA | C | CGG | CGGGAUAGUU |
| pput | NC_002947.3 | >ref|NC_002947.3|:1528974-1530170 | UAA | U | UAC | UACCGCUUCG |
| pput | NC_002947.3 | >ref|NC_002947.3|:1549597-1551237 | UAA | U | UGG | UGGAAUUUAU |
| pput | NC_002947.3 | >ref|NC_002947.3|:c1552817-1551363 | UAA | G | GCC | GCCAGCCUUA |
| pput | NC_002947.3 | >ref|NC_002947.3|:1670223-1670573 | UGA | A | AUA | AUAGUAUGAA |
| pput | NC_002947.3 | >ref|NC_002947.3|:1712263-1712913 | UGA | G | GUG | GUGCAGUUUG |
| pput | NC_002947.3 | >ref|NC_002947.3|:c1737635-1736601 | UGA | U | UCC | UCCGGCGCCU |
| pput | NC_002947.3 | >ref|NC_002947.3|:1786166-1787029 | UAA | U | UAG | UAGGCGCUAG |
| pput | NC_002947.3 | >ref|NC_002947.3|:1803644-1804591 | UAA | G | GAC | GACAGCCCCG |
| pput | NC_002947.3 | >ref|NC_002947.3|:1808946-1810235 | UAA | U | UUC | UUCUGAUUUG |
| pput | NC_002947.3 | >ref|NC_002947.3|:1827143-1828210 | UAA | G | GCA | GCAAGAGAUG |
| pput | NC_002947.3 | >ref|NC_002947.3|:c1861990-1860932 | UGA | U | UUG | UUGCGCAGUA |
| pput | NC_002947.3 | >ref|NC_002947.3|:c2015484-2014042 | UGA | G | GUU | GUUCUGUUUG |
| pput | NC_002947.3 | >ref|NC_002947.3|:c2150516-2147241 | UGA | U | UCC | UCCUGGCGUA |
| pput | NC_002947.3 | >ref|NC_002947.3|:c2672314-2669705 | UAA | U | UUG | UUGGUUUGAA |
| pput | NC_002947.3 | >ref|NC_002947.3|:2813861-2816242 | UAA | G | GGU | GGUCAUGCCC |
| pput | NC_002947.3 | >ref|NC_002947.3|:c3301400-3300900 | UAA | C | CGG | CGGCAUGGGU |
| pput | NC_002947.3 | >ref|NC_002947.3|:4522151-4524376 | UGA | G | GCG | GCGCCAUCCA |
| pput | NC_002947.3 | >ref|NC_002947.3|:4653520-4654845 | UAA | G | GGU | GGUUCGCUUG |
| pput | NC_002947.3 | >ref|NC_002947.3|:4717435-4718655 | UGA | U | UAG | UAGUGGGUUG |
| pput | NC_002947.3 | >ref|NC_002947.3|:c4728668-4727784 | UAA | G | GAC | GACGCUGCUG |
| pput | NC_002947.3 | >ref|NC_002947.3|:c5081536-5080301 | UGA | U | UCG | UCGCCUGACG |
| pput | NC_002947.3 | >ref|NC_002947.3|:c5543255-5542809 | UGA | U | UCG | UCGCCAUGGC |
| pput | NC_002947.3 | >ref|NC_002947.3|:c5760023-5759538 | UGA | U | UCU | UCUGAUUGGC |
| pput | NC_002947.3 | >ref|NC_002947.3|:c5809279-5808011 | UGA | A | ACC | ACCCUGUCUA |
| pput | NC_002947.3 | >ref|NC_002947.3|:c6176586-6175210 | UAA | U | UCA | UCAGGCCGCU |