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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| sent | NC_003198.1 | >ref|NC_003198.1|:7665-8618 | UGA | C | CGC | CGCGUACAGG |
| sent | NC_003198.1 | >ref|NC_003198.1|:11594-13510 | UAA | U | UCA | UCAUUAACGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:17873-19972 | UAA | U | UCG | UCGCCCUUUG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c66634-64859 | UAA | U | UAC | UACACGGUAU |
| sent | NC_003198.1 | >ref|NC_003198.1|:157097-158248 | UAA | A | ACC | ACCAAGGGGG |
| sent | NC_003198.1 | >ref|NC_003198.1|:160107-162812 | UAA | G | GAA | GAAUUAGCUG |
| sent | NC_003198.1 | >ref|NC_003198.1|:179387-182050 | UGA | U | UGC | UGCGAUAAAC |
| sent | NC_003198.1 | >ref|NC_003198.1|:182065-183954 | UAA | G | GAG | GAGGUAAAAG |
| sent | NC_003198.1 | >ref|NC_003198.1|:184153-185580 | UAA | G | GCG | GCGAAAAAGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:189006-191603 | UAA | U | UCU | UCUUCUGCGG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c208285-207905 | UAA | U | UUU | UUUGCCUGAC |
| sent | NC_003198.1 | >ref|NC_003198.1|:252164-253015 | UAA | U | UAA | UAAGGCUUGA |
| sent | NC_003198.1 | >ref|NC_003198.1|:253160-253885 | UGA | U | UUU | UUUUCCUGAG |
| sent | NC_003198.1 | >ref|NC_003198.1|:269925-270884 | UAA | U | UUC | UUCCCGUGAG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c282483-280765 | UAA | U | UCA | UCAUUUACCU |
| sent | NC_003198.1 | >ref|NC_003198.1|:c450880-450278 | UAA | C | CGG | CGGCUGUUUU |
| sent | NC_003198.1 | >ref|NC_003198.1|:c460608-459745 | UAA | U | UAU | UAUUUCGUUU |
| sent | NC_003198.1 | >ref|NC_003198.1|:496233-497504 | UAA | U | UUU | UUUUUCGCGU |
| sent | NC_003198.1 | >ref|NC_003198.1|:535731-536060 | UAA | U | UUA | UUAAACAUUC |
| sent | NC_003198.1 | >ref|NC_003198.1|:536752-538650 | UGA | U | UGC | UGCAAACCAG |
| sent | NC_003198.1 | >ref|NC_003198.1|:539066-539710 | UGA | U | UAA | UAACGCUCAU |
| sent | NC_003198.1 | >ref|NC_003198.1|:c592169-591675 | UAA | U | UUU | UUUUUUUCGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:c670123-668594 | UAA | A | AUU | AUUUCCGUCG |
| sent | NC_003198.1 | >ref|NC_003198.1|:723401-725068 | UAA | U | UCG | UCGCUUCCUG |
| sent | NC_003198.1 | >ref|NC_003198.1|:725520-726926 | UAA | G | GCA | GCACUGCGCC |
| sent | NC_003198.1 | >ref|NC_003198.1|:773502-775268 | UGA | U | UGU | UGUCAGAUGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:779343-780551 | UAA | U | UUG | UUGCGGAGAC |
| sent | NC_003198.1 | >ref|NC_003198.1|:780693-781859 | UAG | U | UCA | UCAGCAAGAG |
| sent | NC_003198.1 | >ref|NC_003198.1|:781859-782728 | UAA | U | UGU | UGUCCGUUUU |
| sent | NC_003198.1 | >ref|NC_003198.1|:791985-792509 | UAA | A | AAA | AAACUCGCUG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c801711-800959 | UAA | G | GAG | GAGAAUUGCA |
| sent | NC_003198.1 | >ref|NC_003198.1|:c926315-924663 | UAA | U | UCA | UCACGUCGGU |
| sent | NC_003198.1 | >ref|NC_003198.1|:c1001389-1000298 | UAA | U | UCC | UCCUCUGAAA |
| sent | NC_003198.1 | >ref|NC_003198.1|:1189783-1190019 | UAA | U | UCG | UCGCGCGAUA |
| sent | NC_003198.1 | >ref|NC_003198.1|:1196033-1197466 | UAA | G | GUG | GUGAACAUCU |
| sent | NC_003198.1 | >ref|NC_003198.1|:1247824-1249359 | UAA | G | GCA | GCAGUAAUGA |
| sent | NC_003198.1 | >ref|NC_003198.1|:c1262571-1259893 | UGA | U | UUG | UUGAACUCGU |
| sent | NC_003198.1 | >ref|NC_003198.1|:1576317-1577468 | UAA | U | UGG | UGGCCAGACG |
| sent | NC_003198.1 | >ref|NC_003198.1|:1665112-1666524 | UAA | U | UUA | UUAUUCAUUA |
| sent | NC_003198.1 | >ref|NC_003198.1|:1666834-1667070 | UAA | U | UAA | UAAUUGUUGU |
| sent | NC_003198.1 | >ref|NC_003198.1|:c1697190-1697146 | UAA | U | UAG | UAGUACCUGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:c1792863-1792009 | UAA | G | GUU | GUUGAGAUGA |
| sent | NC_003198.1 | >ref|NC_003198.1|:1851158-1851958 | UGA | U | UCG | UCGAACCCGG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c1857361-1857152 | UAA | C | CAG | CAGGUGAGCG |
| sent | NC_003198.1 | >ref|NC_003198.1|:2073815-2074516 | UAA | G | GAC | GACGCUUUAU |
| sent | NC_003198.1 | >ref|NC_003198.1|:2074535-2076199 | UGA | U | UAC | UACCCACGAG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c2090757-2090422 | UAA | G | GGG | GGGGUGAGAA |
| sent | NC_003198.1 | >ref|NC_003198.1|:2292820-2293104 | UAA | G | GCA | GCAACAAGCC |
| sent | NC_003198.1 | >ref|NC_003198.1|:c2309999-2309340 | UAA | U | UCG | UCGCCUGGAA |
| sent | NC_003198.1 | >ref|NC_003198.1|:c2323530-2322394 | UAG | C | CGC | CGCCCCGGCA |
| sent | NC_003198.1 | >ref|NC_003198.1|:2341458-2342588 | UGA | U | UGA | UGAAUAGUGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:c2372447-2371590 | UGA | U | UGG | UGGGACGCGU |
| sent | NC_003198.1 | >ref|NC_003198.1|:2404240-2406384 | UGA | U | UUU | UUUCACACCG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c2444855-2443641 | UAA | C | CAG | CAGUAAAAGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:2507478-2507987 | UAA | G | GUU | GUUUUUUUCC |
| sent | NC_003198.1 | >ref|NC_003198.1|:c2589248-2587671 | UAA | U | UUC | UUCUUGCCGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:c2659034-2657781 | UAA | G | GUC | GUCUCUUCGG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3063258-3061741 | UAA | G | GUC | GUCCUUUAGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3198149-3197757 | UAA | U | UCG | UCGCCCGCGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3303936-3301996 | UAA | U | UCU | UCUUUUGAGA |
| sent | NC_003198.1 | >ref|NC_003198.1|:3349044-3353504 | UAA | U | UUC | UUCGUUAUGG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3366409-3366017 | UAA | G | GGA | GGAAUUGAAA |
| sent | NC_003198.1 | >ref|NC_003198.1|:3470104-3470424 | UAA | U | UCG | UCGCACGUUA |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3496045-3494786 | UAA | G | GUU | GUUUUCAAUU |
| sent | NC_003198.1 | >ref|NC_003198.1|:3558479-3560068 | UAA | C | CCU | CCUAUGAGCC |
| sent | NC_003198.1 | >ref|NC_003198.1|:3560084-3561373 | UAA | U | UUC | UUCAGGGAGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3565825-3565553 | UAA | C | CGG | CGGCUGAGUU |
| sent | NC_003198.1 | >ref|NC_003198.1|:3654396-3655163 | UAA | U | UCG | UCGCGUCCAA |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3673106-3672144 | UAA | U | UUG | UUGCCAAUCA |
| sent | NC_003198.1 | >ref|NC_003198.1|:3700591-3701493 | UGA | U | UCC | UCCGCAAAGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3727943-3726120 | UGA | A | AAC | AACGACGUGA |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3754616-3753726 | UAA | U | UCG | UCGUAUAUUA |
| sent | NC_003198.1 | >ref|NC_003198.1|:3771246-3772787 | UAG | U | UAA | UAAGCGUUGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:3773728-3775110 | UAA | C | CGU | CGUCUGGCGG |
| sent | NC_003198.1 | >ref|NC_003198.1|:3778356-3780185 | UAA | C | CGC | CGCCUUAAUC |
| sent | NC_003198.1 | >ref|NC_003198.1|:3789843-3790883 | UAA | G | GUC | GUCAAAUGUU |
| sent | NC_003198.1 | >ref|NC_003198.1|:3793743-3794468 | UAA | U | UUA | UUAACGAAUU |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3803726-3802080 | UAA | A | AUC | AUCUCAUUCU |
| sent | NC_003198.1 | >ref|NC_003198.1|:3830752-3831408 | UAA | C | CCU | CCUGCCUUAA |
| sent | NC_003198.1 | >ref|NC_003198.1|:3925835-3926071 | UAG | C | CGC | CGCCCCGGCA |
| sent | NC_003198.1 | >ref|NC_003198.1|:3926092-3926259 | UAA | G | GUA | GUACUAAGAG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3943820-3942888 | UAA | U | UUC | UUCUCGCUUU |
| sent | NC_003198.1 | >ref|NC_003198.1|:c3951552-3950029 | UAA | U | UAU | UAUGUAUAUA |
| sent | NC_003198.1 | >ref|NC_003198.1|:c4012838-4012626 | UAA | G | GCG | GCGUUCAGUU |
| sent | NC_003198.1 | >ref|NC_003198.1|:c4206033-4203490 | UGA | G | GUA | GUACAUUAAC |
| sent | NC_003198.1 | >ref|NC_003198.1|:4226794-4227168 | UAA | U | UCC | UCCCCGUCGU |
| sent | NC_003198.1 | >ref|NC_003198.1|:4227264-4227734 | UAA | U | UGG | UGGUUCUCCG |
| sent | NC_003198.1 | >ref|NC_003198.1|:4227831-4229945 | UAA | U | UCC | UCCCUUCGGA |
| sent | NC_003198.1 | >ref|NC_003198.1|:4230017-4231201 | UAA | G | GCC | GCCGCAGGGU |
| sent | NC_003198.1 | >ref|NC_003198.1|:4232972-4233283 | UAA | U | UUA | UUACUCGUUA |
| sent | NC_003198.1 | >ref|NC_003198.1|:4233316-4233945 | UAA | U | UCA | UCAGGUCAUC |
| sent | NC_003198.1 | >ref|NC_003198.1|:4233956-4234561 | UAA | G | GGG | GGGGAUAGCA |
| sent | NC_003198.1 | >ref|NC_003198.1|:4234558-4234860 | UGA | U | UUC | UUCGUGAAGA |
| sent | NC_003198.1 | >ref|NC_003198.1|:4234878-4235699 | UAA | G | GUC | GUCGGAGGAG |
| sent | NC_003198.1 | >ref|NC_003198.1|:4236009-4236341 | UAA | U | UUU | UUUUAGAGGA |
| sent | NC_003198.1 | >ref|NC_003198.1|:4236359-4237060 | UGA | G | GAC | GACUCUGGAG |
| sent | NC_003198.1 | >ref|NC_003198.1|:4237674-4237928 | UAA | G | GGA | GGAGCGUCGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:4238474-4238788 | UAA | U | UAC | UACAGUACGC |
| sent | NC_003198.1 | >ref|NC_003198.1|:4239696-4240088 | UAA | U | UUU | UUUGGAGUAG |
| sent | NC_003198.1 | >ref|NC_003198.1|:4241012-4241515 | UAA | U | UCG | UCGGAGGAAA |
| sent | NC_003198.1 | >ref|NC_003198.1|:4241702-4242136 | UAA | A | ACC | ACCAUGGCAA |
| sent | NC_003198.1 | >ref|NC_003198.1|:4270729-4274412 | UAA | G | GUA | GUAGCAGAUG |
| sent | NC_003198.1 | >ref|NC_003198.1|:4285286-4286935 | UGA | U | UUC | UUCAUAAAAU |
| sent | NC_003198.1 | >ref|NC_003198.1|:4306612-4306824 | UGA | U | UGG | UGGCGCUGCG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c4375620-4375285 | UAA | U | UAU | UAUGUUUUCC |
| sent | NC_003198.1 | >ref|NC_003198.1|:4551605-4553251 | UAA | U | UCC | UCCGCGAACG |
| sent | NC_003198.1 | >ref|NC_003198.1|:4556104-4556670 | UAA | U | UUG | UUGCCCACCC |
| sent | NC_003198.1 | >ref|NC_003198.1|:c4562265-4560475 | UAA | U | UUU | UUUACGUUAU |
| sent | NC_003198.1 | >ref|NC_003198.1|:4585444-4586742 | UAA | A | AAU | AAUAGCGUCA |
| sent | NC_003198.1 | >ref|NC_003198.1|:4602981-4603631 | UAA | U | UUG | UUGAUGGAUG |
| sent | NC_003198.1 | >ref|NC_003198.1|:4606057-4606452 | UAA | G | GGA | GGAGCGGCUA |
| sent | NC_003198.1 | >ref|NC_003198.1|:4606778-4607005 | UAA | U | UUU | UUUCUGAUGA |
| sent | NC_003198.1 | >ref|NC_003198.1|:4607047-4607496 | UAA | U | UCG | UCGGUCACGG |
| sent | NC_003198.1 | >ref|NC_003198.1|:c4634377-4633847 | UAA | U | UCA | UCAGUCAUUC |