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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:8237-9190 | UGA | C | CGC | CGCGUACAGG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c10493-9927 | UAA | U | UCA | UCAUUCUUAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c19954-19769 | UAA | U | UCG | UCGCCCUAUA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:29733-32954 | UGA | U | UGA | UGAGUCAAUC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c60677-57771 | UAA | U | UAG | UAGCGUGUCG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:120768-123431 | UAA | A | AAG | AAGCUAACAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:123446-125326 | UAA | G | GAG | GAGGUAAAAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:125651-127075 | UAA | G | GUA | GUAAAAGAGC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:129353-131950 | UAA | U | UUU | UUUUUCGUUU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:167756-168100 | UAA | U | UAA | UAAGUAAGCG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:172030-173454 | UAA | U | UCU | UCUGUUGUUC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c176378-175554 | UAA | U | UCU | UCUCCCUCAA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:181288-182139 | UAA | U | UAA | UAAGGCUUGA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:183303-183860 | UAA | U | UUA | UUAUCAAAAA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:190913-191398 | UGA | U | UUU | UUUCUUGAAC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:199052-200011 | UAA | G | GUA | GUAAUGCCUU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c209160-207442 | UAA | U | UUC | UUCGCAAAAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c306597-305140 | UAA | G | GUC | GUCUGGCGUA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:355920-356252 | UAA | U | UCU | UCUUUUCAAC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c360646-359762 | UAA | U | UUA | UUAAAAUUUU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:390033-391331 | UGA | A | AAU | AAUUAGUAAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:396352-396624 | UAA | U | UUU | UUUACGCAGC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:396816-398687 | UAA | G | GCG | GCGUUGUCCC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:427744-428295 | UAA | U | UCC | UCCUGAAGCC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:430402-430731 | UAA | U | UUA | UUAUCGCCAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:431446-433320 | UGA | U | UGC | UGCAAACCAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:433501-434145 | UGA | U | UGU | UGUCAUGCCG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c472762-472268 | UAA | U | UCA | UCAAGCCGCA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c551307-549775 | UAA | A | AUU | AUUUCCUUCG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c574287-573766 | UAA | A | ACG | ACGUCAUUCG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c634406-632766 | UAA | U | UGG | UGGUUGAUUG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c641860-640196 | UGA | U | UGU | UGUGAUGCGG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c788223-787477 | UAA | G | GCG | GCGCGGGAGG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c844539-843808 | UAA | U | UCA | UCACUUUGGU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c976175-975087 | UAA | U | UUC | UUCUCUGACU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1142224-1142460 | UAA | U | UCA | UCACGCGUCU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1148477-1149910 | UAA | G | GUG | GUGAACAUCU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1199200-1200450 | UAA | U | UCC | UCCGUAAGAC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c1254408-1253317 | UAA | U | UCA | UCACUACAUG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1275268-1279011 | UAA | U | UCU | UCUUUUUUGC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1279008-1280546 | UGA | A | AAA | AAAUUCGUUC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c1293491-1290816 | UGA | U | UCG | UCGAACUCGU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c1345177-1344389 | UAA | U | UCA | UCAAAGUAUG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c1484142-1483342 | UGA | U | UCG | UCGAAUCCAC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1585385-1585582 | UAA | U | UCU | UCUUUCAGCC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1585635-1585991 | UAA | G | GCC | GCCGUUAACG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1586441-1587424 | UAA | G | GCC | GCCAGUUGAA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c1626226-1626023 | UAA | G | GGC | GGCAGGAAUA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1745529-1745936 | UAA | C | CUA | CUAUUCAGUU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c1753383-1753036 | UAA | U | UCU | UCUCCUGCCG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1775571-1776983 | UAA | U | UAA | UAACUGAUGG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1777294-1777530 | UAA | U | UAU | UAUUGCUUUU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c1865823-1865182 | UAA | U | UAG | UAGUACCUGU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:1985546-1986628 | UAA | U | UCG | UCGAUUUUUC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c2075546-2074188 | UAA | U | UCU | UCUGAUUACU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c2242364-2241366 | UAA | U | UCC | UCCCCCUUCA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c2304211-2301725 | UAA | U | UUG | UUGCUGAAUA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c2369006-2368149 | UGA | U | UAU | UAUUGAGAUG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:2402316-2404460 | UGA | U | UUU | UUUCACACCG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c2429185-2427944 | UAA | U | UCU | UCUCGUCAUC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:2511268-2511777 | UAA | U | UUU | UUUCCCGGGU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c2587190-2586564 | UAA | U | UUC | UUCUUGCCGC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c2663966-2662713 | UAA | U | UGA | UGACUCAGGC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c2961178-2959661 | UAA | G | GUC | GUCCUUUCGC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c3127090-3125387 | UAA | U | UCU | UCUUUCUUCA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:3190748-3192574 | UAA | U | UUC | UUCCCCGAGA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c3223829-3222417 | UAG | C | CUU | CUUCCUGGAC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c3356162-3355770 | UAA | G | GCU | GCUCUGUCCC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:3415734-3417383 | UAA | G | GAC | GACUGCAAAA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c3428358-3427168 | UAA | U | UCA | UCAUCAUGCG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:3441085-3441294 | UAA | U | UAG | UAGCAAAACC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:3455975-3456511 | UAA | U | UUA | UUAAUCCCUC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c3490346-3490011 | UGA | U | UUU | UUUGUCAUUA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c3553957-3553685 | UAA | U | UGG | UGGAGCAAUA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:3646729-3647496 | UAA | U | UCG | UCGCGUUCAA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c3650666-3649722 | UAA | G | GUC | GUCUGACAGG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c3717114-3716488 | UAA | U | UAG | UAGUUGAAGU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c3805939-3804464 | UAA | G | GAU | GAUUGCAUGC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:3846169-3847710 | UAG | U | UAA | UAAGCGUUGC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:3848651-3850033 | UAA | C | CGU | CGUCUGGCGG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:3852356-3854185 | UAA | C | CGC | CGCCUUAAUC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c3901955-3899541 | UAA | U | UCA | UCACUAUCAU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:3906912-3908558 | UAA | U | UAA | UAAAGCUAAC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c3938805-3937765 | UGA | U | UUC | UUCGGUGAGU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:3993526-3993693 | UAA | G | GUA | GUACUUAGAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c4008758-4007826 | UAA | U | UUC | UUCUCGCUUU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c4017361-4015817 | UAA | C | CAC | CACGAACAAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c4036907-4034994 | UGA | U | UGA | UGAACCAACG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c4084104-4083892 | UAA | U | UAA | UAACGCCGUU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c4270572-4268950 | UAA | U | UUA | UUAAAAGCCA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4326007-4326819 | UAA | U | UAC | UACCGAAAAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4328874-4329248 | UAA | G | GCA | GCAUUAAGAA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4329345-4329815 | UAA | U | UGG | UGGUUCUCCG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4330060-4332027 | UAA | U | UCC | UCCCUUCGGA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4332098-4333282 | UAA | G | GCC | GCCUAAGGGU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4335051-4335362 | UAA | U | UUA | UUACACGUUA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4335395-4336024 | UAA | U | UCA | UCAGGUCAUU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4336035-4336640 | UAA | G | GGA | GGAGAUAGCA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4336637-4336939 | UGA | U | UUC | UUCGUGAAGA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4336957-4337778 | UAA | G | GUC | GUCGGAGGAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4338088-4338420 | UAA | U | UUU | UUUUAGAGGA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4338438-4339139 | UGA | G | GAC | GACUCUGGAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4339152-4339562 | UAA | G | GGA | GGAGCGUCGC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4339753-4340007 | UAA | U | UGA | UGAAAGCAAA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4340554-4340868 | UAA | U | UAC | UACAGUACAC |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4340883-4341422 | UAA | U | UUU | UUUGGAGUAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4341776-4342168 | UAA | G | GGU | GGUAGGGUUA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4342181-4342714 | UAA | U | UCG | UCGGAGGAAA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4342724-4343077 | UAA | G | GGU | GGUAACACUA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4343092-4343595 | UAA | G | GGU | GGUAGAGGUG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4343782-4344216 | UAA | A | ACC | ACCAUGGCAA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4346223-4346612 | UAA | G | GUA | GUAGCAGAUG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c4362630-4361170 | UAA | C | CGC | CGCCUCGUUU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c4401191-4400775 | UAA | U | UCA | UCAACACAGU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4416652-4418790 | UAA | U | UCU | UCUUGAUGGA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4431046-4431576 | UAA | U | UCU | UCUUCACUCU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c4464185-4462704 | UAA | G | GUU | GUUCUUCUAG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4466838-4468484 | UAA | U | UCC | UCCGCGCACG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4472279-4472845 | UAA | U | UUG | UUGCCCUGCA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:c4477097-4476363 | UAA | U | UGC | UGCGGUUGUG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4501665-4502963 | UAA | U | UAU | UAUAACGACU |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4518146-4518610 | UAA | U | UUC | UUCUGGUACG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4518624-4519274 | UAA | G | GAA | GAAGGAAUUG |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4521555-4521950 | UAA | G | GGA | GGAGCGGAUA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4522276-4522503 | UAA | U | UUU | UUUCUGAUGA |
| shifle2 | NC_004741.1 | >ref|NC_004741.1|:4522545-4522994 | UAA | U | UCG | UCGGUCACGG |