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| Abbrev | Code | Location | StopCodon | +4nt | +456nt | Upstream |
| smut | NC_004350.1 | >ref|NC_004350.1|:25082-26377 | UAA | U | UGA | UGAAAAAUUU |
| smut | NC_004350.1 | >ref|NC_004350.1|:69215-69292 | UAA | U | UUU | UUUAAUAUUA |
| smut | NC_004350.1 | >ref|NC_004350.1|:85642-87480 | UAA | U | UAU | UAUUUUGUGA |
| smut | NC_004350.1 | >ref|NC_004350.1|:94301-95584 | UAA | A | AAU | AAUAGUUCAG |
| smut | NC_004350.1 | >ref|NC_004350.1|:100574-101455 | UAA | A | AAA | AAAAUAAAAG |
| smut | NC_004350.1 | >ref|NC_004350.1|:121103-121291 | UAA | U | UUA | UUACUUGGUU |
| smut | NC_004350.1 | >ref|NC_004350.1|:156212-156481 | UAA | U | UGU | UGUGAAGAGC |
| smut | NC_004350.1 | >ref|NC_004350.1|:169798-170244 | UAA | U | UUG | UUGGAGUGAG |
| smut | NC_004350.1 | >ref|NC_004350.1|:170269-170661 | UAA | G | GAG | GAGGAAAGGA |
| smut | NC_004350.1 | >ref|NC_004350.1|:c193935-193675 | UAA | G | GAA | GAACAGCUAC |
| smut | NC_004350.1 | >ref|NC_004350.1|:262880-263161 | UAA | A | AAU | AAUAAAUGAU |
| smut | NC_004350.1 | >ref|NC_004350.1|:c287670-287452 | UAA | A | AAA | AAAGCGUAGU |
| smut | NC_004350.1 | >ref|NC_004350.1|:334526-334996 | UAA | G | GGA | GGAAGGGAGA |
| smut | NC_004350.1 | >ref|NC_004350.1|:335165-337246 | UAG | G | GAU | GAUACAACCC |
| smut | NC_004350.1 | >ref|NC_004350.1|:337541-338554 | UAA | U | UUU | UUUCUUUAGU |
| smut | NC_004350.1 | >ref|NC_004350.1|:338960-340156 | UAA | U | UAC | UACUCAUUAU |
| smut | NC_004350.1 | >ref|NC_004350.1|:341554-342900 | UAA | G | GAU | GAUGUACGCC |
| smut | NC_004350.1 | >ref|NC_004350.1|:c378356-376029 | UAA | G | GGU | GGUUAGAAAA |
| smut | NC_004350.1 | >ref|NC_004350.1|:549332-549607 | UAA | C | CAA | CAAAAACACA |
| smut | NC_004350.1 | >ref|NC_004350.1|:553966-554658 | UAA | G | GAU | GAUUUUGGCA |
| smut | NC_004350.1 | >ref|NC_004350.1|:588268-588879 | UAA | G | GAG | GAGAAUAAUA |
| smut | NC_004350.1 | >ref|NC_004350.1|:637444-637707 | UAA | A | ACC | ACCUUAAAGC |
| smut | NC_004350.1 | >ref|NC_004350.1|:c659245-659051 | UAA | A | AGA | AGAUAUGACA |
| smut | NC_004350.1 | >ref|NC_004350.1|:661444-661803 | UAA | G | GAG | GAGUAAUUUA |
| smut | NC_004350.1 | >ref|NC_004350.1|:672868-674064 | UAA | A | AUU | AUUUUUUGCU |
| smut | NC_004350.1 | >ref|NC_004350.1|:674360-675118 | UAA | G | GAA | GAAAUUAAGU |
| smut | NC_004350.1 | >ref|NC_004350.1|:712912-713472 | UAA | G | GCU | GCUGAGCUGA |
| smut | NC_004350.1 | >ref|NC_004350.1|:733873-734214 | UAA | G | GGA | GGAGAAACUA |
| smut | NC_004350.1 | >ref|NC_004350.1|:763222-763398 | UGA | U | UUG | UUGUGAGUGU |
| smut | NC_004350.1 | >ref|NC_004350.1|:768686-769021 | UAA | A | AGU | AGUGAUUAAA |
| smut | NC_004350.1 | >ref|NC_004350.1|:797035-797349 | UGA | A | AGU | AGUUAAAUUG |
| smut | NC_004350.1 | >ref|NC_004350.1|:797718-798011 | UAA | G | GAU | GAUAAACUGA |
| smut | NC_004350.1 | >ref|NC_004350.1|:814687-814962 | UAA | A | AAG | AAGUUACUAC |
| smut | NC_004350.1 | >ref|NC_004350.1|:849954-850226 | UAA | A | AGU | AGUCUUGCCU |
| smut | NC_004350.1 | >ref|NC_004350.1|:907994-908497 | UAA | G | GCA | GCAAACCAGA |
| smut | NC_004350.1 | >ref|NC_004350.1|:908563-908931 | UAA | G | GUC | GUCUUCAAAC |
| smut | NC_004350.1 | >ref|NC_004350.1|:935710-936786 | UAA | G | GAG | GAGAGUCUUG |
| smut | NC_004350.1 | >ref|NC_004350.1|:971596-971724 | UAA | A | AAU | AAUAACUAAU |
| smut | NC_004350.1 | >ref|NC_004350.1|:1056409-1057395 | UAA | A | AAC | AACUACGUUA |
| smut | NC_004350.1 | >ref|NC_004350.1|:1069298-1069552 | UAA | A | ACA | ACAAUAAAAA |
| smut | NC_004350.1 | >ref|NC_004350.1|:c1121591-1121259 | UAA | A | AAA | AAAAACCUCA |
| smut | NC_004350.1 | >ref|NC_004350.1|:1405139-1405315 | UAA | U | UAA | UAAGAAAGAA |
| smut | NC_004350.1 | >ref|NC_004350.1|:c1531198-1530881 | UAA | U | UUG | UUGAUUUACU |