Shewanella loihica PV-4, complete genome - 1..4602594 Location Strand Length PID Gene Synonym Code COG Product 3783-6200 + 805 127510939 - Shew_0004 - - DNA gyrase, B subunit 69872-72721 + 949 127510994 - Shew_0059 - - molybdopterin oxidoreductase 72749-73339 + 196 127510995 - Shew_0060 - - 4Fe-4S ferredoxin, iron-sulfur binding domain protein 75104-77959 + 951 127510998 - Shew_0063 - - molybdopterin oxidoreductase 77980-78549 + 189 127510999 - Shew_0064 - - 4Fe-4S ferredoxin, iron-sulfur binding domain protein 160907-162091 + 394 127511078 - Shew_0144 - - translation elongation factor Tu 162755-163297 + 180 127511080 - Shew_0146 - - NusG antitermination factor 163424-163852 + 142 127511081 - Shew_0147 - - ribosomal protein L11 163857-164558 + 233 127511082 - Shew_0148 - - ribosomal protein L1 164826-165323 + 165 127511083 - Shew_0149 - - ribosomal protein L10 165377-165745 + 122 127511084 - Shew_0150 - - ribosomal protein L7/L12 165984-170015 + 1343 127511085 - Shew_0151 - - DNA-directed RNA polymerase, beta subunit 170098-174312 + 1404 127511086 - Shew_0152 - - DNA-directed RNA polymerase, beta' subunit 174503-174877 + 124 127511087 - Shew_0153 - - ribosomal protein S12 174958-175428 + 156 127511088 - Shew_0154 - - ribosomal protein S7 177680-178864 + 394 127511090 - Shew_0156 - - translation elongation factor Tu 179226-179537 + 103 127511091 - Shew_0157 - - ribosomal protein S10 179565-180203 + 212 127511092 - Shew_0158 - - ribosomal protein L3 180220-180825 + 201 127511093 - Shew_0159 - - ribosomal protein L4/L1e 180822-181121 + 99 127511094 - Shew_0160 - - Ribosomal protein L25/L23 181138-181965 + 275 127511095 - Shew_0161 - - ribosomal protein L2 181977-182255 + 92 127511096 - Shew_0162 - - ribosomal protein S19 182271-182603 + 110 127511097 - Shew_0163 - - ribosomal protein L22 182613-183302 + 229 127511098 - Shew_0164 - - ribosomal protein S3 183314-183724 + 136 127511099 - Shew_0165 - - ribosomal protein L16 183724-183915 + 63 127511100 - Shew_0166 - - ribosomal protein L29 183915-184163 + 82 127511101 - Shew_0167 - - ribosomal protein S17 184343-184711 + 122 127511102 - Shew_0168 - - ribosomal protein L14 184723-185037 + 104 127511103 - Shew_0169 - - ribosomal protein L24 185050-185589 + 179 127511104 - Shew_0170 - - ribosomal protein L5 185600-185905 + 101 127511105 - Shew_0171 - - ribosomal protein S14 185929-186321 + 130 127511106 - Shew_0172 - - ribosomal protein S8 186332-186862 + 176 127511107 - Shew_0173 - - ribosomal protein L6 186873-187223 + 116 127511108 - Shew_0174 - - ribosomal protein L18 187237-187740 + 167 127511109 - Shew_0175 - - ribosomal protein S5 187746-187928 + 60 127511110 - Shew_0176 - - ribosomal protein L30 187932-188366 + 144 127511111 - Shew_0177 - - ribosomal protein L15 189736-189849 + 37 127511113 - Shew_0179 - - ribosomal protein L36 189967-190323 + 118 127511114 - Shew_0180 - - ribosomal protein S13 190341-190733 + 130 127511115 - Shew_0181 - - ribosomal protein S11 190770-191390 + 206 127511116 - Shew_0182 - - ribosomal protein S4 191415-192404 + 329 127511117 - Shew_0183 - - DNA-directed RNA polymerase, alpha subunit 192444-192836 + 130 127511118 - Shew_0184 - - ribosomal protein L17 197116-197409 + 97 127511125 - Shew_0191 - - cytochrome c, class I 228784-229299 + 171 127511147 - Shew_0213 - - Shikimate kinase 283924-284535 + 203 127511199 - Shew_0265 - - DSBA oxidoreductase 285155-285361 - 68 127511201 - Shew_0267 - - protein of unknown function DUF904 286882-287517 - 211 127511204 - Shew_0270 - - hypothetical protein 289060-289803 - 247 127511206 - Shew_0272 - - Cupin 2, conserved barrel domain protein 374408-374713 - 101 127511263 - Shew_0329 - - transcriptional regulator, Fis family 382589-383854 - 421 127511271 - Shew_0337 - - transcription termination factor Rho 384085-384411 - 108 127511272 - Shew_0338 - - thioredoxin 431296-431508 + 70 127511315 - Shew_0381 - - ribosomal protein L31 482940-483212 - 90 127511364 - Shew_0430 - - histone family protein DNA-binding protein 501945-502352 + 135 127511385 - Shew_0451 - - protein of unknown function DUF1260 529453-531102 + 549 127511406 - Shew_0472 - - chaperonin GroEL 610364-610642 + 92 127511471 - Shew_0537 - - hypothetical protein 646761-647975 + 404 127511505 - Shew_0571 - - Cytochrome b/b6, N-terminal domain 647975-648676 + 233 127511506 - Shew_0572 - - cytochrome c1 662616-663251 - 211 127511519 - Shew_0585 - - transcriptional regulator, Crp/Fnr family 739685-739960 - 91 127511586 - Shew_0652 - - hypothetical protein 850608-851759 - 383 127511685 - Shew_0751 - - Methionine adenosyltransferase 852283-854277 + 664 127511686 - Shew_0752 - - transketolase 856859-857923 + 354 127511689 - Shew_0755 - - fructose-bisphosphate aldolase, class II, Calvin cycle subtype 888003-888722 - 239 127511711 - Shew_0777 - - two component transcriptional regulator, winged helix family 892722-896573 - 1283 127511715 - Shew_0781 - - peptidase S8 and S53, subtilisin, kexin, sedolisin 904370-904939 + 189 127511726 - Shew_0792 - - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 933950-935452 + 500 127511746 - Shew_0812 - - lysyl-tRNA synthetase 963046-963813 + 255 127511774 - Shew_0840 - - peptidylprolyl isomerase, FKBP-type 967114-968514 + 466 127511778 - Shew_0844 - - Nitrite reductase (cytochrome; ammonia-forming) 975242-975418 - 58 127511786 - Shew_0852 - - hypothetical protein 988255-989190 + 311 127511801 - Shew_0867 - - malate dehydrogenase, NAD-dependent 990557-990868 + 103 127511803 - Shew_0869 - - ribosomal protein L21 990884-991138 + 84 127511804 - Shew_0870 - - ribosomal protein L27 1037603-1039897 + 764 127511851 - Shew_0918 - - decaheme cytochrome c 1157719-1157934 - 71 127511932 - Shew_0999 - - ribosomal protein S21 1164241-1164507 - 88 127511940 - Shew_1007 - - major outer membrane lipoprotein, putative 1225680-1225931 + 83 127511996 - Shew_1063 - - ribosomal protein S16 1227279-1227629 + 116 127511999 - Shew_1066 - - ribosomal protein L19 1238761-1239222 - 153 127512008 - Shew_1075 - - cytochrome c, class II 1240366-1240980 - 204 127512011 - Shew_1078 - - peptidylprolyl isomerase, FKBP-type 1255197-1256300 - 367 127512023 - Shew_1090 - - OmpA/MotB domain protein 1256548-1258914 - 788 127512024 - Shew_1091 - - Phosphoketolase 1263964-1264230 - 88 127512029 - Shew_1096 - - ribosomal protein S20 1281505-1284129 + 874 127512045 - Shew_1112 - - TonB-dependent receptor 1341110-1341319 - 69 127512097 - Shew_1165 - - cold-shock DNA-binding domain protein 1377630-1378883 + 417 127512117 - Shew_1185 - - Glycine hydroxymethyltransferase 1398573-1400210 + 545 127512136 - Shew_1204 - - CTP synthase 1400342-1401637 + 431 127512137 - Shew_1205 - - Phosphopyruvate hydratase 1410941-1412002 + 353 127512147 - Shew_1215 - - recA protein 1415710-1415907 + 65 127512150 - Shew_1218 - - carbon storage regulator, CsrA 1441813-1442898 - 361 127512175 - Shew_1243 - - Peptidyl-Lys metalloendopeptidase 1566690-1567508 + 272 127512288 - Shew_1357 - - flagellin domain protein 1735736-1736773 - 345 127512442 - Shew_1513 - - phosphoribosylformylglycinamidine cyclo-ligase 1736985-1737611 + 208 127512443 - Shew_1514 - - uracil phosphoribosyltransferase 1739339-1739944 + 201 127512445 - Shew_1516 - - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 1751441-1751983 + 180 127512457 - Shew_1528 - - OmpA domain protein 1755907-1756164 - 85 127512460 - Shew_1531 - - Glutaredoxin, GrxA family 1777401-1779770 + 789 127512478 - Shew_1549 - - phosphoenolpyruvate synthase 1785277-1786308 - 343 127512484 - Shew_1555 - - Glu/Leu/Phe/Val dehydrogenase, dimerisation region 1788546-1789916 - 456 127512487 - Shew_1558 - - adenylosuccinate lyase 1793391-1795610 + 739 127512492 - Shew_1563 - - isocitrate dehydrogenase, NADP-dependent 1801435-1801794 - 119 127512500 - Shew_1571 - - hypothetical protein 1832274-1832444 + 56 127512528 - Shew_1599 - - ribosomal protein L32 1836347-1836580 + 77 127512533 - Shew_1604 - - acyl carrier protein 1846228-1846434 + 68 127512543 - Shew_1614 - - cold-shock DNA-binding domain protein 1877726-1877905 + 59 127512569 - Shew_1640 - - protein of unknown function DUF343 1897131-1898417 - 428 127512579 - Shew_1650 - - citrate synthase I 1899567-1901333 + 588 127512582 - Shew_1653 - - succinate dehydrogenase, flavoprotein subunit 1901344-1902051 + 235 127512583 - Shew_1654 - - succinate dehydrogenase and fumarate reductase iron-sulfur protein 1905122-1906312 + 396 127512585 - Shew_1656 - - 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 1906416-1907582 + 388 127512586 - Shew_1657 - - succinyl-CoA synthetase, beta subunit 1907582-1908454 + 290 127512587 - Shew_1658 - - succinyl-CoA synthetase, alpha subunit 1978401-1978751 + 116 127512653 - Shew_1724 - - cytochrome c3 2105880-2106167 + 95 127512758 - Shew_1830 - - ribosomal protein L25 2111512-2112096 - 194 127512762 - Shew_1834 - - Superoxide dismutase 2112328-2112678 + 116 127512763 - Shew_1835 - - glutaredoxin-like protein 2135944-2137014 - 356 127512785 - Shew_1857 - - iron-containing alcohol dehydrogenase 2150354-2152438 - 694 127512800 - Shew_1872 - - translation elongation factor G 2175650-2178478 - 942 127512816 - Shew_1888 - - TonB-dependent receptor, plug 2195005-2196405 - 466 127512828 - Shew_1900 - - asparaginyl-tRNA synthetase 2200934-2202991 + 685 127512833 - Shew_1905 - - peptidase S9, prolyl oligopeptidase active site domain protein 2213855-2214415 - 186 127512843 - Shew_1915 - - translation elongation factor P 2215844-2216371 - 175 127512845 - Shew_1917 - - flavodoxin 2230705-2231049 + 114 127512859 - Shew_1931 - - alkylphosphonate utilization operon protein PhnA 2259598-2261265 + 555 127512882 - Shew_1954 - - ribosomal protein S1 2297760-2299187 + 475 127512913 - Shew_1985 - - cytochrome c oxidase, cbb3-type, subunit I 2299200-2299805 + 201 127512914 - Shew_1986 - - cytochrome c oxidase, cbb3-type, subunit II 2299988-2300959 + 323 127512916 - Shew_1988 - - cytochrome c oxidase, cbb3-type, subunit III 2312470-2313906 - 478 127512928 - Shew_2000 - - glyceraldehyde-3-phosphate dehydrogenase, type I 2315161-2316171 + 336 127512930 - Shew_2002 - - glyceraldehyde-3-phosphate dehydrogenase, type I 2332809-2334095 - 428 127512948 - Shew_2020 - - seryl-tRNA synthetase 2340047-2341162 + 371 127512954 - Shew_2026 - - alanine dehydrogenase 2341219-2341938 + 239 127512955 - Shew_2027 - - alanine dehydrogenase/PNT domain protein 2342070-2343020 + 316 127512956 - Shew_2028 - - thioredoxin reductase 2343311-2343670 - 119 127512957 - Shew_2029 - - ribosomal protein L20 2343689-2343883 - 64 127512958 - Shew_2030 - - ribosomal protein L35 2366431-2367870 + 479 127512978 - Shew_2050 - - Pyruvate kinase 2481047-2482750 - 567 127513063 - Shew_2135 - - 5'-nucleotidase 2497142-2497486 + 114 127513080 - Shew_2152 - - hypothetical protein 2499904-2500944 + 346 127513083 - Shew_2155 - - 4-hydroxyphenylpyruvate dioxygenase 2572977-2576453 + 1158 127513137 - Shew_2209 - - peptidase S8 and S53, subtilisin, kexin, sedolisin 2606468-2607112 - 214 127513158 - Shew_2230 - - adenylate kinase 2618656-2619096 - 146 127513169 - Shew_2241 - - hypothetical protein 2621298-2623976 - 892 127513172 - Shew_2244 - - TonB-dependent receptor 2640707-2641006 + 99 127513189 - Shew_2261 - - YCII-related protein 2708004-2708435 - 143 127513238 - Shew_2310 - - Nucleoside-diphosphate kinase 2712101-2712484 - 127 127513244 - Shew_2316 - - FeS cluster assembly scaffold IscU 2716213-2717016 + 267 127513249 - Shew_2321 - - inositol monophosphatase 2730216-2730491 - 91 127513264 - Shew_2336 - - preprotein translocase, YajC subunit 2792231-2794918 + 895 127513313 - Shew_2385 - - TonB-dependent receptor, plug 2802496-2804778 + 760 127513318 - Shew_2390 - - formate acetyltransferase 2806268-2807464 + 398 127513321 - Shew_2393 - - acetate kinase 2847897-2848532 + 211 127513350 - Shew_2422 - - hypothetical protein 2848551-2848670 + 39 127513351 - Shew_2423 - - hypothetical protein 2908372-2909619 - 415 127513401 - Shew_2473 - - tetratricopeptide domain protein 2909622-2910239 - 205 127513402 - Shew_2474 - - TonB family protein 2910241-2910645 - 134 127513403 - Shew_2475 - - Biopolymer transport protein ExbD/TolR 2911186-2912541 - 451 127513405 - Shew_2477 - - MotA/TolQ/ExbB proton channel 2912541-2913323 - 260 127513406 - Shew_2478 - - hypothetical protein 2914896-2917526 - 876 127513408 - Shew_2480 - - TonB-dependent receptor 2918374-2919585 - 403 127513409 - Shew_2481 - - porin, Gram-negative type 2935235-2935918 - 227 127513424 - Shew_2496 - - phage shock protein A, PspA 2946482-2946754 - 90 127513433 - Shew_2505 - - histone family protein DNA-binding protein 2951564-2952868 - 434 127513437 - Shew_2509 - - trigger factor 2974805-2976982 + 725 127513452 - Shew_2524 - - decaheme cytochrome c 2977355-2979325 + 656 127513453 - Shew_2525 - - decaheme cytochrome c 3010647-3011288 - 213 127513482 - Shew_2554 - - OmpW family protein 3049582-3049974 + 130 127513513 - Shew_2585 - - histone family protein nucleoid-structuring protein H-NS 3099778-3100272 - 164 127513554 - Shew_2626 - - outer membrane chaperone Skp (OmpH) 3107230-3107787 - 185 127513560 - Shew_2632 - - ribosome recycling factor 3108700-3109548 - 282 127513562 - Shew_2634 - - translation elongation factor Ts 3109668-3110396 - 242 127513563 - Shew_2635 - - ribosomal protein S2 3212018-3212773 - 251 127513642 - Shew_2714 - - hypothetical protein 3219709-3221550 - 613 127513648 - Shew_2720 - - peptidase S8 and S53, subtilisin, kexin, sedolisin 3247141-3248112 - 323 127513675 - Shew_2747 - - phosphate binding protein 3250922-3251872 - 316 127513678 - Shew_2750 - - porin, Gram-negative type 3265570-3266577 + 335 127513688 - Shew_2760 - - Isocitrate dehydrogenase (NAD(+)) 3332289-3332999 - 236 127513740 - Shew_2812 - - purine nucleoside phosphorylase 3335827-3336600 - 257 127513743 - Shew_2815 - - deoxyribose-phosphate aldolase 3337052-3337885 - 277 127513744 - Shew_2816 - - nucleoside-specific channel-forming protein, Tsx 3338227-3339486 - 419 127513745 - Shew_2817 - - nucleoside transporter 3343826-3345928 - 700 127513750 - Shew_2822 - - Polyribonucleotide nucleotidyltransferase 3348265-3348534 - 89 127513752 - Shew_2824 - - ribosomal protein S15 3350124-3352781 - 885 127513755 - Shew_2827 - - translation initiation factor IF-2 3352808-3354307 - 499 127513756 - Shew_2828 - - NusA antitermination factor 3368359-3368976 - 205 127513769 - Shew_2841 - - peptidylprolyl isomerase, FKBP-type 3371401-3373314 - 637 127513772 - Shew_2844 - - chaperone protein DnaK 3414314-3414538 - 74 127513802 - Shew_2874 - - protein of unknown function DUF539 3415828-3417075 - 415 127513804 - Shew_2876 - - NADH:ubiquinone oxidoreductase, subunit F 3418370-3419164 - 264 127513807 - Shew_2879 - - NADH:ubiquinone oxidoreductase, subunit C 3436624-3436983 + 119 127513826 - Shew_2898 - - protein of unknown function DUF413 3454282-3455256 + 324 127513844 - Shew_2916 - - ribose-phosphate pyrophosphokinase 3457797-3458888 - 363 127513847 - Shew_2919 - - GTP-binding protein YchF 3526276-3528360 - 694 127513901 - Shew_2973 - - Endothelin-converting enzyme 1 3559546-3559812 + 88 127513927 - Shew_2999 - - hypothetical protein 3635485-3638373 - 962 127513990 - Shew_3062 - - glycine dehydrogenase 3638542-3638931 - 129 127513991 - Shew_3063 - - glycine cleavage system H protein 3693260-3695050 - 596 127514040 - Shew_3112 - - flavocytochrome c 3707988-3709160 + 390 127514048 - Shew_3120 - - phosphate-selective porin O and P 3721436-3721879 + 147 127514057 - Shew_3129 - - transcriptional regulator, TraR/DksA family 3837701-3842251 - 1516 127514146 - Shew_3218 - - Carbamoyl-phosphate synthase L chain, ATP-binding 3898387-3899415 + 342 127514188 - Shew_3260 - - porin, Gram-negative type 3925564-3926016 - 150 127514209 - Shew_3281 - - ribosomal protein L9 3926044-3926271 - 75 127514210 - Shew_3282 - - ribosomal protein S18 3926598-3927005 - 135 127514212 - Shew_3284 - - ribosomal protein S6 3935074-3936369 - 431 127514219 - Shew_3291 - - Adenylosuccinate synthase 3936731-3937123 - 130 127514221 - Shew_3293 - - ribosomal protein S9 3937139-3937570 - 143 127514222 - Shew_3294 - - ribosomal protein L13 4025915-4026145 + 76 127514304 - Shew_3376 - - twin-arginine translocation protein, TatA/E family subunit 4040611-4040826 + 71 127514319 - Shew_3391 - - protein of unknown function DUF465 4079474-4082071 - 865 127514352 - Shew_3424 - - Aconitate hydratase 4092336-4093763 - 475 127514357 - Shew_3429 - - dihydrolipoamide dehydrogenase 4095881-4098547 - 888 127514359 - Shew_3431 - - 2-oxo-acid dehydrogenase E1 subunit, homodimeric type 4103142-4103495 + 117 127514364 - Shew_3436 - - methylation site containing protein 4166177-4166350 - 57 127514407 - Shew_3479 - - ribosomal protein L33 4166357-4166593 - 78 127514408 - Shew_3480 - - ribosomal protein L28 4184353-4184634 + 93 127514426 - Shew_3498 - - DNA-directed RNA polymerase, omega subunit 4229319-4229882 + 187 127514468 - Shew_3540 - - NapC/NirT cytochrome c domain protein 4242295-4244118 - 607 127514481 - Shew_3553 - - GTP-binding protein TypA 4244487-4245896 + 469 127514482 - Shew_3554 - - glutamine synthetase, type I 4312535-4312969 - 144 127514544 - Shew_3616 - - general secretion pathway protein G 4422745-4423365 + 206 127514644 - Shew_3716 - - cytochrome c, class I 4527540-4528028 - 162 127514732 - Shew_3804 - - protein-export protein SecB 4576612-4577988 - 458 127514770 - Shew_3845 - - ATP synthase F1, beta subunit 4578024-4578884 - 286 127514771 - Shew_3846 - - ATP synthase F1, gamma subunit 4578934-4580475 - 513 127514772 - Shew_3847 - - ATP synthase F1, alpha subunit 4580490-4581023 - 177 127514773 - Shew_3848 - - ATP synthase F1, delta subunit 4581038-4581508 - 156 127514774 - Shew_3849 - - ATP synthase F0, B subunit 4581546-4581797 - 83 127514775 - Shew_3850 - - ATP synthase F0, C subunit