Bdellovibrio bacteriovorus HD100, complete genome - 1..3782950 Location Strand Length PID Gene Synonym Code COG Product 6410-8893 + 827 42521655 gyrA Bd0005 - COG0188L DNA gyrase subunit A 10271-10960 + 229 42521659 atpB Bd0009 - - ATP synthase F0, A subunit 10993-11310 + 105 42521660 atpE/H Bd0010 - COG0636C ATP synthase subunit C 19818-20786 - 322 42521670 etfA Bd0021 - COG2025C Electron transfer flavoprotein alpha-subunit 22422-24338 + 638 42521673 sdhA Bd0025 - COG1053C succinate dehydrogenase 29347-29805 + 152 42521680 rpsF Bd0032 - COG0360J 30S ribosomal protein S6 30732-31175 + 147 42521682 rplI Bd0034 - COG0359J 50S ribosomal protein L9 31347-32222 + 291 42521683 - Bd0035 - COG5640O Trypsin 38608-39180 + 190 42521690 - Bd0042 - - hypothetical protein 59532-61277 + 581 42521712 rho Bd0065 - COG1158K transcription termination factor Rho 62139-62384 + 81 42521714 rpmE Bd0068 - COG0254J 50S ribosomal protein L31 90797-91099 + 100 42521742 groES Bd0097 - COG0234O chaperonin groES 91156-92796 + 546 42521743 groEL Bd0099 - COG0459O 60 KDA chaperonin 121875-123689 + 604 42521774 typA Bd0137 - COG1217T GTP-binding elongation factor:elongation factor Tu domain 159377-160078 - 233 42521806 - Bd0172 - - hypothetical protein 173461-174219 + 252 42521819 sufC Bd0187 - COG0396O Iron-regulated ABC transporter ATPase subunit SufC 209451-209996 - 181 42521849 - Bd0223 - COG5394S putative regulator for granula-associated protein 254423-254839 - 138 42521890 gcvH Bd0266 - COG0509E glycine cleavage system protein H homologue 302192-302689 + 165 42521937 tpx Bd0315 - COG2077O thiol peroxidase 309996-310544 - 182 42521948 btuE Bd0326 - COG0386O putative vitamin B12 transport protein 321102-321575 + 157 42521958 slyD Bd0336 - COG1047O FKBP-type peptidyl-prolyl cis-trans isomerase 322390-322752 + 120 42521960 rbp Bd0339 - COG0724R RNA-binding protein 334166-335788 + 540 42521975 dppA Bd0357 - COG0747E ABC-type Dipeptide transport protein, periplasmic 369350-372166 - 938 42522008 ace Bd0394 - COG2609C pyruvate dehydrogenase E1 component 388215-389486 - 423 42522026 - Bd0412 - - hypothetical protein 391290-392360 - 356 42522029 - Bd0415 - - hypothetical protein 405347-406408 + 353 42522040 - Bd0427 - - hypothetical protein 456788-457042 - 84 42522095 - Bd0487 - - hypothetical protein 460698-461096 + 132 42522100 rpsI Bd0493 - - 30S ribosomal subunit protein S9 462958-463347 - 129 42522103 - Bd0496 - - hypothetical protein 479471-480604 + 377 42522117 recA Bd0512 - COG0468L recombinase A 500430-500759 + 109 42522139 flgM Bd0537 - COG2747KNU FlgM, negative regulator of flagellin synthesis 504657-505184 + 175 42522143 - Bd0543 - COG1699S putative transmembrane protein 520456-521595 + 379 42522160 citZ Bd0562 - COG0372C hypothetical protein 532495-533580 + 361 42522171 - Bd0575 - COG3487P Iron-regulated protein A precursor 591026-591532 + 168 42522223 pal Bd0633 - COG2885M peptidoglycan-associated lipoprotein 601690-602085 - 131 42522236 - Bd0647 - - hypothetical protein 604420-605415 + 331 42522240 - Bd0652 - - hypothetical protein 624580-625413 - 277 42522261 - Bd0674 - - hypothetical protein 632725-633114 - 129 42522270 - Bd0683 - COG0509E glycine cleavage system protein H homologue 641565-644441 - 958 42522278 - Bd0692 - COG0403E,COG1003E glycine dehydrogenase 669564-669848 + 94 42522296 - Bd0710 - - hypothetical protein 693899-695098 + 399 42522317 yloN Bd0733 - COG0820R hypothetical protein 712175-713203 - 342 42522334 - Bd0751 - - putative protease 716548-717081 - 177 42522337 - Bd0754 - - putative protease 733471-734892 - 473 42522357 pdhD Bd0778 - COG1249C dihydrolipoamide dehydrogenase, E3 subunit 734959-736590 - 543 42522358 pdhC Bd0779 - COG0508C pyruvate dehydrogenase E2 741002-741784 - 260 42522366 - Bd0789 - COG1651O disulfide interchange protein 745744-747012 + 422 42522372 eno Bd0796 - COG0148G phosphopyruvate hydratase 795930-797093 + 387 42522422 metK Bd0850 - COG0192H S-adenosylmethionine synthetase 849253-849702 - 149 42522466 - Bd0896 - - Orotate phosphoribosyltransferase 889949-890218 - 89 42522507 - Bd0940 - - 30S ribosomal protein S18 890715-890975 + 86 42522508 rplX Bd0941 - COG0198J 50S ribosomal protein L24 899133-901475 + 780 42522520 - Bd0954 - COG2183K hypothetical protein 913566-915587 + 673 42522531 prc Bd0967 - COG0793M tail-specific protease 928871-929380 + 169 42522545 - Bd0983 - - hypothetical protein 930333-932441 - 702 42522548 fusA-2 Bd0987 - COG0480J elongation factor EF-2 994370-995377 + 335 42522605 gapdh Bd1049 - COG0057G glyceraldehyde-3-phosphate dehydrogenase 995381-996586 + 401 42522606 pgk Bd1050 - - phosphoglycerate kinase 1011942-1013729 + 595 42522621 rpsA Bd1066 - COG0539J 30S ribosomal protein S1 1038683-1039423 + 246 42522652 - Bd1103 - - hypothetical protein 1087485-1088825 + 446 42522689 glyS Bd1147 - COG0423J glycyl-tRNA synthetase 1088920-1089423 - 167 42522690 - Bd1148 - - hypothetical protein 1089581-1089937 - 118 42522691 - Bd1149 - - hypothetical protein 1097720-1101307 + 1195 42522699 smc Bd1158 - COG1196D chromosome segregation SMC protein 1128086-1129651 + 521 42522725 - Bd1188 - COG1418R putative HD superfamily hydrolase 1138486-1139682 + 398 42522733 rpsA Bd1198 - COG0539J 30S ribosomal protein S1 1156963-1158672 + 569 42522753 dppD Bd1221 - COG1123R ABC-type dipeptide transport system, ATPase component 1186701-1189649 - 982 42522777 putA Bd1251 - COG1012C 1-pyrroline-5 carboxylate dehydrogenase 1204904-1205653 - 249 42522796 - Bd1272 - - hypothetical protein 1228736-1230649 + 637 42522821 dnaK Bd1298 - COG0443O Chaperone protein dnaK 1264057-1264479 + 140 42522857 - Bd1337 - COG5531B hypothetical protein 1265722-1267137 + 471 42522859 ahcY Bd1339 - COG0499H S-adenosyl-L-homocysteine hydrolase 1323702-1324052 + 116 42522915 rbpA Bd1397 - COG0724R putative RNA-binding protein 1333210-1335180 - 656 42522929 deaD Bd1412 - COG0513LKJ ATP-dependent RNA helicase 1356925-1357233 - 102 42522958 - Bd1442 - - hypothetical protein 1386752-1387015 - 87 42522980 - Bd1467 - COG0268J 30S ribosomal protein S20 1470368-1471756 + 462 42523053 nusA Bd1546 - COG0195K transcription elongation factor NusA 1471858-1474785 + 975 42523054 infB Bd1547 - COG0532J translation initiation factor IF-2 1476236-1476505 + 89 42523057 rpsO Bd1550 - - 30S ribosomal protein S15 1476606-1478699 + 697 42523058 pnp Bd1551 - COG1185J polyribonucleotide nucleotidyltransferase 1494075-1494314 + 79 42523074 rnpO Bd1569 - COG1758K putative DNA-directed RNA polymerase, omega subunit 1509811-1510311 - 166 42523084 - Bd1579 - - hypothetical protein 1511895-1512326 - 143 42523087 ssb Bd1582 - COG0629L single-strand binding protein 1520803-1521213 - 136 42523096 - Bd1591 - - General secretion pathway protein G precursor 1526171-1528468 - 765 42523102 gspD Bd1597 - COG1450NU general secretion pathway protein D 1538350-1541451 + 1033 42523112 hmoA Bd1608 - COG0243C,COG0437C molybdopterin oxidoreductase, iron-sulfur binding subunit 1543927-1545129 + 400 42523116 - Bd1612 - - putative molybdopterin oxidoreductase 1562592-1562939 + 115 42523128 rplT Bd1625 - - 50S ribosomal protein L20 1580272-1580796 - 174 42523147 - Bd1645 - - hypothetical protein 1590589-1591590 + 333 42523158 pstS Bd1658 - COG0226P Periplasmic phosphate-binding protein of ABC transporter 1651395-1653461 + 688 42523211 ppa Bd1715 - - vacuolar-type H+-pyrophosphatase 1700023-1700511 + 162 42523255 - Bd1765 - - putative Organic solvent tolerance protein 1729478-1729849 + 123 42523289 - Bd1802 - - putative high potential iron-sulfur protein (HiPIP) 1776533-1777393 + 286 42523333 - Bd1850 - COG1250I 3-hydroxybutyryl-CoA dehydrogenase 1872257-1872544 - 95 42523434 - Bd1957 - - hypothetical protein 1875478-1876347 + 289 42523439 - Bd1962 - - putative V8-like Glu-specific endopeptidase 1884854-1886020 - 388 42523450 - Bd1973 - COG1960I butyryl-CoA dehydrogenase 1888200-1889666 + 488 42523454 - Bd1977 - - hypothetical protein 1893220-1894230 - 336 42523460 nrdB Bd1983 - COG0208F ribonucleotide-diphosphate reductase small chain 1894359-1896764 - 801 42523461 nrdA Bd1984 - COG0209F ribonucleoside-diphosphate reductase alpha chain 1915621-1916211 + 196 42523477 - Bd2001 - - YCE I like family protein 1918731-1919708 + 325 42523481 - Bd2005 - - hypothetical protein 1923667-1923903 - 78 42523486 acp Bd2011 - COG0236IQ hypothetical protein 1926851-1927036 - 61 42523490 rpl32 Bd2015 - COG0333J 50S ribosomal protein L32 1937302-1938432 + 376 42523503 - Bd2028 - COG0334E leucine dehydrogenase 1938567-1939373 + 268 42523504 - Bd2030 - - hypothetical protein 2004362-2004841 - 159 42523562 - Bd2091 - - hypothetical protein 2007267-2008442 + 391 42523565 - Bd2095 - COG0183I probable acetyl-CoA acetyltransferase 2026452-2026823 - 123 42523585 rplS Bd2117 - - 50S ribosomal protein L19 2029202-2029450 - 82 42523590 rpsP Bd2122 - - 30S ribosomal protein S16 2074980-2077430 - 816 42523637 - Bd2174 - COG1960I butyryl-CoA dehydrogenase 2077657-2077872 - 71 42523638 - Bd2175 - - hypothetical protein 2090912-2092606 + 564 42523653 appA Bd2191 - COG0747E ABC transporter, substrate binding protein 2096480-2096719 + 79 42523658 tatE Bd2196 - COG1826U twin-argine protein translocase component 2131382-2132320 - 312 42523691 secF Bd2233 - COG0341U protein-export membrane protein SecF 2167557-2169206 - 549 42523726 - Bd2269 - COG1404O serine protease, subtilase family 2202439-2202642 + 67 42523758 - Bd2307 - - hypothetical protein 2237847-2238770 - 307 42523786 fba Bd2339 - COG1830G fructose-bisphosphate aldolase 2251412-2252383 - 323 42523795 dys Bd2349 - COG1899O hypothetical protein 2327078-2327881 + 267 42523861 - Bd2420 - - hypothetical protein 2331635-2332540 - 301 42523868 - Bd2427 - - hypothetical protein 2380646-2381752 - 368 42523911 alaDH Bd2478 - COG0686E hypothetical protein 2393777-2394343 + 188 42523921 efp Bd2491 - COG0231J translation elongation factor EF-P 2404924-2406432 + 502 42523929 - Bd2500 - - 2-methylcitrate dehydratase 2416989-2418155 + 388 42523938 cit Bd2511 - COG0372C citrate synthase 2422288-2422854 + 188 42523944 ahpC Bd2517 - COG0450O alkyl hydroperoxide reductase, C22 subunit 2482751-2483446 - 231 42523992 fkpA Bd2569 - COG0545O peptidyl-prolyl cis-trans isomerase, FKBP-type 2490818-2491039 + 73 42524000 - Bd2577 - - hypothetical protein 2546497-2547267 - 256 42524050 - Bd2630 - COG5640O trypsin 2614528-2616069 - 513 42524110 - Bd2692 - COG1404O protease 2626372-2627010 + 212 42524123 rplY Bd2705 - COG1825J 50S ribosomal protein L25 2627821-2628921 + 366 42524125 ychF Bd2707 - COG0012J GTP-binding protein 2653248-2654507 + 419 42524146 sucB Bd2729 - COG0508C 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase 2654510-2655919 + 469 42524147 lpdA Bd2731 - COG1249C dihydrolipoamide dehydrogenase 2684964-2685608 + 214 42524180 yiaD Bd2769 - COG2885M putative outer membrane protein 2695715-2697973 - 752 42524194 leuC Bd2784 - COG1048C 3-isopropylmalate isomerase 2770655-2771818 - 387 42524271 top6A Bd2864 - - DNA topoisomerase VI subunit A 2771818-2773587 - 589 42524272 top6B Bd2865 - COG1389L DNA topoisomerase VI subunit B 2859721-2860266 - 181 42524351 rplQ Bd2949 - COG0203J 50S ribosomal protein L17 2860422-2861420 - 332 42524352 rpoA Bd2950 - COG0202K DNA-directed RNA polymerase alpha subunit 2862518-2862892 - 124 42524355 rpsM Bd2953 - COG0099J 30S ribosomal protein S13 2865748-2866206 - 152 42524360 rpsE Bd2958 - COG0098J 30S ribosomal protein S5 2870968-2871786 - 272 42524372 rplB Bd2973 - COG0090J 50S ribosomal protein L2 2872067-2872696 - 209 42524374 rplD Bd2975 - - 50S ribosomal protein L4 2872698-2873360 - 220 42524375 rplC Bd2976 - - 50S ribosomal protein L3 2876494-2876868 - 124 42524379 rpsL Bd2981 - - 30S ribosomal protein S12 2877051-2881178 - 1375 42524380 rpoC Bd2983 - COG0086K DNA-directed RNA polymerase, beta' subunit 2881208-2885476 - 1422 42524381 rpoB Bd2984 - COG0085K DNA-directed RNA polymerase beta chain 2886814-2887182 - 122 42524384 rplL Bd2987 - COG0222J 50S ribosomal protein L7/L12 2888031-2888735 - 234 42524386 rplA Bd2990 - - 50S ribosomal protein L1 2889233-2889766 - 177 42524388 nusG Bd2992 - COG0250K transcription antitermination protein 2890460-2891650 - 396 42524390 tuf Bd2994 - COG0050J translation elongation factor Tu 2893955-2894194 + 79 42524393 - Bd2997 - - hypothetical protein 2950090-2950629 - 179 42524431 ribH Bd3037 - - riboflavin synthase beta chain 2960612-2961445 + 277 42524444 flgL Bd3052 - COG1344N flagellin 2962576-2963172 + 198 42524446 - Bd3054 - - hypothetical protein 2973490-2974548 - 352 42524455 nifA Bd3063 - COG2204T Transcriptional regulator 2991538-2992830 - 430 42524473 nuoF Bd3083 - COG1894C NADH dehydrogenase I, F subunit 2993315-2994997 - 560 42524475 nuoD Bd3085 - COG0649C NADH dehydrogenase I,D subunit 2995743-2997161 + 472 42524477 - Bd3087 - COG1404O protease 3041842-3046752 + 1636 42524522 - Bd3137 - - hypothetical protein 3086497-3088536 + 679 42524554 dcp Bd3171 - COG0339E peptidyl-dipeptidase 3109566-3111224 - 552 42524571 ftsZ Bd3189 - COG0206D cell division protein FtsZ 3141088-3141624 + 178 42524598 hpt Bd3219 - COG0634F hypoxanthine-guanine phosphoribosyltransferase homologue 3179884-3180681 + 265 42524638 - Bd3264 - COG1187J putative pseudouridylate synthase 3215679-3215966 + 95 42524668 - Bd3296 - - hypothetical protein 3266057-3268030 + 657 42524719 - Bd3355 - - hypothetical protein 3291022-3291294 + 90 42524742 - Bd3382 - - putative DNA-binding protein HU-beta 3306124-3307407 - 427 42524754 flgE Bd3395 - COG1749N hypothetical protein 3359924-3361204 + 426 42524804 hemL Bd3449 - COG0001H glutamate-1-semialdehyde 2,1-aminomutase 3370568-3372217 - 549 42524815 rhlB Bd3461 - COG0513LKJ ATP-dependent RNA helicase 3382600-3383004 + 134 42524825 - Bd3472 - - hypothetical protein 3397730-3398437 + 235 42524840 ubiE Bd3487 - COG2226H ubiquinone/menaquinone biosynthesis methyltransferase 3414695-3415564 + 289 42524860 - Bd3507 - COG2356L putative secreted nuclease 3421918-3422361 - 147 42524870 - Bd3518 - - hypothetical protein 3427878-3428405 + 175 42524877 - Bd3525 - COG0450O hypothetical protein 3446290-3447348 - 352 42524895 - Bd3543 - COG3185ER 4-hydroxyphenylpyruvate dioxygenase 3483311-3483811 + 166 42524930 - Bd3582 - - hypothetical protein 3512217-3513503 + 428 42524959 - Bd3616 - COG0421E probable spermidine synthase 3513569-3514189 + 206 42524960 sodB Bd3617 - COG0605P hypothetical protein 3584322-3585734 - 470 42525037 - Bd3702 - - hypothetical protein 3598277-3599506 + 409 42525054 icdA Bd3723 - COG0538C isocitrate dehydrogenase 3628505-3630007 + 500 42525083 pepA Bd3755 - - aminopeptidase A/I 3638321-3639634 + 437 42525092 tig Bd3764 - COG0544O trigger factor 3654740-3655681 + 313 42525107 rpsB Bd3780 - - 30S ribosomal protein S2 3655803-3656729 + 308 42525108 tsf Bd3782 - - elongation factor Ts 3657458-3658018 + 186 42525110 rrf Bd3784 - - hypothetical protein 3670617-3670748 + 43 42525126 - Bd3800 - - hypothetical protein 3675791-3676954 + 387 42525134 sucC Bd3810 - COG0045C succinyl-CoA synthetase beta chain 3676961-3677833 + 290 42525135 sucD Bd3811 - COG0074C succinyl-CoA synthetase alpha chain 3690443-3690781 + 112 42525146 - Bd3822 - - hypothetical protein 3695038-3695463 + 141 42525151 ndk Bd3827 - - hypothetical protein