Herminiimonas arsenicoxydans, complete genome - 1..3424307 Location Strand Length PID Gene Synonym Code COG Product 2006-3112 + 368 134093296 dnaN HEAR0003 - - DNA polymerase III, beta-subunit 26152-26715 - 187 134093319 ahpC HEAR0029 - - Alkyl hydroperoxide reductase subunit C (Peroxiredoxin) (Thioredoxin peroxidase) (Alkyl hydroperoxide reductase protein C22) (SCRP-23) (Sulfate starvation-induced protein 8) (SSI8) 89460-90119 + 219 134093385 dsbA HEAR0095 - - Thiol:disulfide interchange protein dsbA precursor 96212-97231 + 339 134093392 bioB HEAR0102 - - Biotin synthase (Biotin synthetase) 232176-233249 - 357 134093519 - HEAR0236 - - putative porin 235659-236099 - 146 134093522 - HEAR0239 - - Putative OsmC-like protein 236838-237230 + 130 134093524 rpsI HEAR0241 - - 30S ribosomal protein S9 322319-324067 + 582 134093610 gcl HEAR0332 - - glyoxylate carboligase (Tartronate-semialdehyde synthase) 324070-324849 + 259 134093611 hyi HEAR0333 - - hydroxypyruvate isomerase 324951-325838 + 295 134093612 glxR HEAR0334 - - tartronic semialdehyde reductase 327335-328750 + 471 134093614 - HEAR0336 - - pyruvate kinase 335218-336384 + 388 134093621 sucC HEAR0343 - - succinyl-CoA synthetase, beta subunit 336387-337262 + 291 134093622 sucD HEAR0344 - - succinyl-CoA synthetase, alpha subunit, NAD(P)-binding 339933-340961 + 342 134093626 - HEAR0348 - - conserved hypothetical protein; periplasmic 345173-346885 + 570 134093631 oxc HEAR0353 - - oxalyl-CoA decarboxylase with Thiamin diphosphate-binding fold (THDP-binding) and DHS-like NAD/FAD-binding domain 347145-348404 + 419 134093632 frcA HEAR0354 - - formyl-CoA transferase subutit, NAD(P)-binding 352129-353832 + 567 134093635 - HEAR0357 - - NAD dependent formate dehydrogenase beta subunit Fdh1B 554815-555471 - 218 134093812 - HEAR0554 - - hypothetical protein 612665-614413 - 582 134093864 glnS HEAR0612 - - glutamine tRNA synthetase 618305-620914 + 869 134093868 alaS HEAR0616 - - alanyl-tRNA synthetase 627711-628097 + 128 134093877 rplS HEAR0626 - - 50S ribosomal subunit protein L19 703859-704125 - 88 134093949 rpmE2 HEAR0703 - - 50S ribosomal protein L31 type B 705081-706346 - 421 134093951 rho HEAR0705 - - transcription termination factor 740620-742293 + 557 134093980 ilvD HEAR0734 - - dihydroxyacid dehydratase (ilvD-like) 752339-755035 + 898 134093992 aceE HEAR0746 - - pyruvate dehydrogenase E1 component of the pyruvate dehydrogenase complex 755162-756529 + 455 134093993 aceF HEAR0747 - - Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) 789879-791807 - 642 134094027 htpG HEAR0782 - - chaperone Hsp90, heat shock protein C 62.5 817442-817798 - 118 134094052 fklB HEAR0807 - - peptidyl-prolyl cis-trans isomerase (rotamase) 878210-878524 - 104 134094109 - HEAR0870 - - hypothetical protein 878551-879888 - 445 134094110 argG HEAR0871 - - argininosuccinate synthetase 928804-929022 - 72 134094159 - HEAR0923 - - hypothetical protein 951967-953376 + 469 134094183 glnA HEAR0948 - - glutamine synthetase 994363-994938 + 191 134094222 - HEAR0988 - - Elongation factor P (EF-P) 1065677-1067929 - 750 134094285 - HEAR1054 - - putative ornithine decarboxylase 1235271-1236341 + 356 134094446 leuB HEAR1217 - - 3-isopropylmalate dehydrogenase 1257395-1258411 + 338 134094467 ilvC HEAR1239 - - acetohydroxy acid isomeroreductase 1279112-1279537 + 141 134094487 ndk HEAR1260 - - nucleoside diphosphate kinase 1301594-1302082 - 162 134094508 ppiB HEAR1283 - - peptidyl-prolyl cis-trans isomerase B (rotamase B) 1339054-1339878 - 274 134094549 dapD HEAR1324 - - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 1357148-1357894 + 248 134094560 rpsB HEAR1335 - - 30S ribosomal subunit protein S2 1358035-1358916 + 293 134094561 tsf HEAR1336 - - protein chain elongation factor EF-Ts 1744323-1745099 + 258 134094945 - HEAR1739 - - Peptidyl-prolyl cis-trans isomerase domain protein 1759072-1759344 - 90 134094955 hupB HEAR1749 - - DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation 1764347-1765693 - 448 134094959 tig HEAR1753 - - peptidyl-prolyl cis/trans isomerase (trigger factor), molecular chaperone involved in cell division 1791995-1792984 + 329 134094986 mdh HEAR1780 - - malate dehydrogenase 1794704-1797442 + 912 134094989 acnA HEAR1783 - - aconitate hydratase 1 1841648-1843780 - 710 134095034 pnp HEAR1829 - - polynucleotide phosphorylase, has polyadenylase activity 1843998-1844267 - 89 134095035 rpsO HEAR1830 - - 30S ribosomal subunit protein S15 2083144-2083386 - 80 134095264 acpP HEAR2074 - - acyl carrier protein 2087469-2087651 - 60 134095269 rpmF HEAR2079 - - 50S ribosomal subunit protein L32 2093929-2096850 + 973 134095278 rne HEAR2089 - - RNase E: endoribonuclease for rRNA processing and mRNA degradation 2130217-2130420 + 67 134095316 - HEAR2131 - - DNA-directed RNA polymerase omega chain (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) 2162923-2163375 - 150 134095344 rplI HEAR2159 - - 50S ribosomal subunit protein L9 2163401-2163685 - 94 134095345 - HEAR2160 - - 30S ribosomal protein S18 2164019-2164387 - 122 134095347 rpsF HEAR2162 - - 30S ribosomal subunit protein S6 2174519-2174755 + 78 134095356 - HEAR2171 - - conserved hypothetical protein. 2187612-2188895 - 427 134095372 eno HEAR2188 - - enolase 2231805-2232782 + 325 134095412 prfB HEAR2229 - - peptide chain release factor RF-2 2232859-2234394 + 511 134095413 lysS HEAR2230 - - lysine tRNA synthetase, constitutive 2239055-2239459 - 134 134095419 iscU HEAR2238 - - iron-sulfur template protein IscU 2245561-2246775 + 404 134095425 tyrB HEAR2244 - - tyrosine aminotransferase, tyrosine-repressible, PLP-dependent 2295356-2295484 + 42 134095482 - HEAR2304 - - hypothetical protein 2314311-2315717 + 468 134095506 - HEAR2328 - - putative ATP-dependent RNA helicase with P-loop hydrolase domain 2355293-2356537 - 414 134095557 glyA HEAR2380 - - serine hydroxymethyltransferase 2369021-2370715 + 564 134095569 cysI HEAR2392 - - sulfite reductase 2372001-2372936 + 311 134095572 cysD HEAR2395 - - ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase) 2372936-2374267 + 443 134095573 cysN HEAR2396 - - ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) 2384193-2384696 + 167 134095585 - HEAR2408 - - putative Peptidoglycan-associated lipoprotein precursor (pal) 2402318-2404156 - 612 134095607 typA HEAR2430 - - GTP-binding elongation factor family protein with P-loop containing NTP hydrolase domain 2423551-2423814 - 87 134095626 rpsT HEAR2451 - - 30S ribosomal subunit protein S20 2443225-2443392 + 55 134095644 rpmG HEAR2470 - - 50S ribosomal subunit protein L33 2470640-2471218 + 192 134095671 sodB HEAR2498 - - superoxide dismutase, iron 2472155-2473165 + 336 134095672 cysP HEAR2499 - - thiosulfate transport protein (ABC superfamily, peri_bind) 2520052-2520342 + 96 134095719 groS HEAR2551 - - chaperone Hsp10 (GroES), part of GroE chaperone system 2520465-2522105 + 546 134095720 groL HEAR2552 - - chaperone Hsp60 (GroEL), part of GroE chaperone system 2543840-2545519 - 559 134095742 rpsA HEAR2574 - - 30S ribosomal subunit protein S1 2556064-2556681 + 205 134095751 - HEAR2583 - - putative outer membrane protein 3a (II*;G;d) 2599320-2600423 - 367 134095796 recA HEAR2628 - - DNA strand exchange and recombination protein with protease and nuclease activity 2616888-2618837 - 649 134095815 dnaK HEAR2647 - - chaperone Hsp70 in DNA biosynthesis/cell division 2643959-2644186 + 75 134095841 - HEAR2673 - - conserved hypothetical protein; putative signal peptide 2753663-2754115 + 150 134095941 - HEAR2779 - - hypothetical protein 2777231-2777734 - 167 134095964 - HEAR2804 - - Putative alkyl hydroperoxide reductase. Putative member of the AhpC/TSA-family protein 2818284-2820083 - 599 134096004 aspS HEAR2844 - - aspartate tRNA synthetase. Conserved domains: IPR002312 (Aspartyl-tRNA synthetase, class IIb), IPR002313 (Lysyl-tRNA synthetase, class-2), IPR004115 (GAD domain), IPR004364 (tRNA synthetase, class II (D, K and N)), IPR004365 (OB-fold nucleic acid binding domain), IPR004524 (Aspartyl-tRNA synthetase bacterial/mitochondrial type), IPR008994 (Nucleic acid-binding OB-fold) 2828684-2829631 - 315 134096015 - HEAR2855 - - conserved hypothetical protein; putative signal peptide. 2870295-2870927 + 210 134096054 rplY HEAR2894 - - 50S ribosomal subunit protein L25 involved in general stress. Conserved domains: IPR001021 (Ribosomal protein L25), IPR011035 (Ribosomal protein L25-like) 2871783-2872874 + 363 134096056 engD HEAR2896 - - GTP-binding protein with nucleoside triP hydrolase domain. 2918712-2920151 - 479 134096108 sahH HEAR2950 - - S-adenosyl-L-homocysteine hydrolase. Conserved domain: IPR000043 (S-adenosyl-L-homocysteine hydrolase) 2921352-2922515 - 387 134096110 metK HEAR2952 - - methionine adenosyltransferase 1 (AdoMet synthetase). Conserved domain: IPR002133 (S-adenosylmethionine synthetase) 3104400-3104795 - 131 134096295 - HEAR3140 - - 50S ribosomal subunit protein L17 3104942-3105919 - 325 134096296 rpoA HEAR3141 - - RNA polymerase, alpha subunit 3106014-3106637 - 207 134096297 rpsD HEAR3142 - - 30S ribosomal subunit protein S4 3106822-3107226 - 134 134096298 rpsK HEAR3143 - - 30S ribosomal subunit protein S11 3107270-3107635 - 121 134096299 rpsM HEAR3144 - - 30S ribosomal subunit protein S13 3109413-3109844 - 143 134096302 rplO HEAR3147 - - 50S ribosomal subunit protein L15 3111918-3112223 - 101 134096308 rpsN HEAR3153 - - 30S ribosomal subunit protein S14 3112777-3113091 - 104 134096310 rplX HEAR3155 - - 50S ribosomal subunit protein L24 3114595-3115446 - 283 134096315 rpsC HEAR3160 - - 30S ribosomal protein S3 3115785-3116060 - 91 134096317 rpsS HEAR3162 - - 30S ribosomal subunit protein S19 3116070-3116897 - 275 134096318 rplB HEAR3163 - - 50S ribosomal subunit protein L2 3118719-3119051 - 110 134096322 rpsJ HEAR3167 - - 30S ribosomal subunit protein S10 3119135-3120325 - 396 134096323 tufB HEAR3168 - - protein chain elongation factor EF-Tu; GTP-binding factor (duplicate of tufA) 3120459-3122567 - 702 134096324 fusA HEAR3169 - - protein chain elongation factor EF-G, GTP-binding 3123303-3123686 - 127 134096326 rpsL HEAR3171 - - 30S ribosomal subunit protein S12 3124115-3128359 - 1414 134096327 rpoC HEAR3172 - - RNA polymerase, beta prime subunit 3128612-3132718 - 1368 134096328 rpoB HEAR3173 - - RNA polymerase, beta subunit 3133005-3133379 - 124 134096329 rplL HEAR3174 - - 50S ribosomal subunit protein L7/L12 3134338-3135033 - 231 134096331 rplA HEAR3176 - - 50S ribosomal subunit protein L1, regulates synthesis of L1 and L11 3136780-3137970 - 396 134096335 tufA HEAR3180 - - Duplicate gene for EF-Tu subunit; elongation factor, unstable; essential gene, with tuf B 3208460-3209779 - 439 134096402 - HEAR3249 - - hypothetical protein 3298608-3298889 + 93 134096486 - HEAR3336 - - hypothetical protein 3357892-3359292 - 466 134096552 atpD HEAR3405 - - membrane-bound ATP synthase, F1 sector, beta-subunit 3360259-3361794 - 511 134096554 atpA HEAR3407 - - membrane-bound ATP synthase, F1 sector, alpha-subunit 3361844-3362377 - 177 134096555 atpH HEAR3408 - - membrane-bound ATP synthase , F1 sector, delta-subunit