Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 Location Strand Length PID Gene Synonym Code COG Product 94399-94779 - 126 28867312 - PSPTO_0072 - COG0251J endoribonuclease L-PSP, putative 103735-105132 - 465 28867323 algC PSPTO_0083 - COG1109G phosphomannomutase AlgC 111105-111260 + 51 28867330 rpmG PSPTO_0090 - COG0267J 50S ribosomal protein L33 178848-180077 + 409 28867398 trpB PSPTO_0158 - COG0133E tryptophan synthase subunit beta 242831-243160 + 109 28867452 - PSPTO_0220 - - hypothetical protein 259238-260782 + 514 28867471 pckA PSPTO_0239 - COG1866C phosphoenolpyruvate carboxykinase 269650-271287 + 545 28867481 - PSPTO_0249 - COG0747E peptide ABC transporter, periplasmic peptide-binding protein 327391-328671 + 426 28867532 gabT-2 PSPTO_0301 - COG0160E 4-aminobutyrate aminotransferase 356256-358577 - 773 28867558 - PSPTO_0327 - COG2183K S1 RNA binding domain protein 371424-372068 - 214 28867572 dsbA PSPTO_0341 - - thiol:disulfide interchange protein DsbA 391090-392496 - 468 28867589 glnA-1 PSPTO_0359 - - glutamine synthetase, type I 394429-396249 + 606 28867591 typA PSPTO_0361 - COG1217T GTP-binding protein TypA 423533-424723 - 396 28867613 metK PSPTO_0383 - COG0192H S-adenosylmethionine synthetase 425999-427996 + 665 28867615 tkt PSPTO_0385 - COG0021G transketolase 431157-432221 + 354 28867620 fba PSPTO_0390 - COG0191G fructose-bisphosphate aldolase 485655-487127 + 490 28867671 badH PSPTO_0441 - COG1012C betaine aldehyde dehydrogenase 555671-555832 + 53 28867736 - PSPTO_0507 - COG0401S hypothetical protein 593192-593407 - 71 28867767 rpsU PSPTO_0539 - COG0828J 30S ribosomal protein S21 618732-619766 + 344 28867791 - PSPTO_0563 - COG0687E polyamine ABC transporter, periplasmic polyamine-binding protein 675993-676424 + 143 28867843 rplK PSPTO_0615 - - 50S ribosomal protein L11 676424-677119 + 231 28867844 rplA PSPTO_0616 - - 50S ribosomal protein L1 677902-678267 + 121 28867846 rplL PSPTO_0618 - COG0222J 50S ribosomal protein L7/L12 678489-682562 + 1357 28867847 rpoB PSPTO_0619 - COG0085K DNA-directed RNA polymerase beta subunit 682627-686826 + 1399 28867848 rpoC PSPTO_0620 - COG0086K DNA-directed RNA polymerase beta' subunit 687024-687395 + 123 28867849 rpsL PSPTO_0621 - - 30S ribosomal protein S12 690156-691349 + 397 28867852 tuf PSPTO_0624 - COG0050J elongation factor Tu 691884-692519 + 211 28867854 rplC PSPTO_0626 - - 50S ribosomal protein L3 693131-693430 + 99 28867856 rplW PSPTO_0628 - COG0089J 50S ribosomal protein L23 693445-694269 + 274 28867857 rplB PSPTO_0629 - COG0090J 50S ribosomal protein L2 696227-696493 + 88 28867863 rpsQ PSPTO_0635 - COG0186J 30S ribosomal protein S17 696897-697211 + 104 28867865 rplX PSPTO_0637 - COG0198J 50S ribosomal protein L24 697785-698090 + 101 28867867 rpsN PSPTO_0639 - COG0199J 30S ribosomal protein S14 700291-700725 + 144 28867873 rplO PSPTO_0645 - COG0200J 50S ribosomal protein L15 702336-702692 + 118 28867876 rpsM PSPTO_0648 - COG0099J 30S ribosomal protein S13 702723-703112 + 129 28867877 rpsK PSPTO_0649 - COG0100J 30S ribosomal protein S11 703131-703751 + 206 28867878 rpsD PSPTO_0650 - COG0522J 30S ribosomal protein S4 704817-705203 + 128 28867880 rplQ PSPTO_0652 - COG0203J 50S ribosomal protein L17 710392-710961 + 189 28867884 ssB PSPTO_0656 - COG0629L single-strand DNA-binding protein 747074-747550 + 158 28867921 ribH PSPTO_0693 - - riboflavin synthase subunit beta 747547-748044 + 165 28867922 nusB PSPTO_0694 - COG0781K transcription antitermination protein NusB 771799-772326 - 175 28867950 ppa-1 PSPTO_0722 - COG0221C inorganic pyrophosphatase 777182-778702 - 506 28867956 - PSPTO_0728 - COG1012C aldehyde dehydrogenase family protein 863291-863602 + 103 28868025 rplU PSPTO_0797 - - 50S ribosomal protein L21 863635-863910 + 91 28868026 rpmA PSPTO_0798 - - 50S ribosomal protein L27 867260-867538 - 92 28868030 rpsT PSPTO_0802 - COG0268J 30S ribosomal protein S20 892888-893904 - 338 28868054 - PSPTO_0826 - COG4105R competence lipoprotein ComL, putative 1022006-1022584 + 192 28868165 terE PSPTO_0945 - COG2310T tellurium resistance protein TerE 1067857-1068873 + 338 28868203 ilvC PSPTO_0983 - COG0059EH ketol-acid reductoisomerase 1215889-1216989 - 366 28868316 ychF PSPTO_1101 - COG0012J GTP-binding protein YchF 1217760-1218371 - 203 28868318 - PSPTO_1103 - COG1825J 50S ribosomal protein L25 1243387-1243944 + 185 28868346 hpt PSPTO_1131 - COG0634F hypoxanthine-guanine phosphoribosyltransferase 1286390-1286875 + 161 28868384 - PSPTO_1171 - COG1047O peptidyl-prolyl cis-trans isomerase, FKBP-type 1351082-1352533 - 483 28868443 algA PSPTO_1232 - COG0836M,COG0662G alginate biosynthesis protein AlgA 1352670-1353338 - 222 28868444 algF PSPTO_1233 - - alginate biosynthesis protein AlgF 1360516-1361997 - 493 28868450 algE PSPTO_1239 - - alginate biosynthesis protein AlgE 1366206-1367522 - 438 28868454 algD PSPTO_1243 - COG1004M GDP-mannose 6-dehydrogenase AlgD 1378253-1379281 + 342 28868466 - PSPTO_1255 - COG0834ET amino acid ABC transporter, periplasmic amino acid-binding protein 1387607-1387888 + 93 28868477 - PSPTO_1266 - - DNA-binding protein HU family 1393501-1394991 - 496 28868482 pepA PSPTO_1271 - - leucyl aminopeptidase 1397612-1397824 - 70 28868485 - PSPTO_1274 - - cold shock domain family protein 1415258-1416259 - 333 28868497 gap-1 PSPTO_1287 - COG0057G glyceraldehyde-3-phosphate dehydrogenase 1421695-1422981 + 428 28868502 - PSPTO_1292 - COG1653G glucose ABC transporter, periplasmic glucose-binding protein, putative 1433113-1433583 + 156 28868514 - PSPTO_1304 - - hypothetical protein 1462008-1463027 + 339 28868540 ilvE PSPTO_1332 - COG0115EH branched-chain amino acid aminotransferase 1554227-1554562 + 111 28868621 yajC PSPTO_1414 - COG1862U preprotein translocase subunit YajC 1559737-1560552 - 271 28868626 suhB PSPTO_1419 - COG0483G inositol-1-monophosphatase 1564310-1564696 + 128 28868631 iscU PSPTO_1424 - COG0822C iron-binding protein IscU 1568159-1568584 + 141 28868637 ndk PSPTO_1430 - - nucleoside diphosphate kinase 1589700-1591277 + 525 28868657 guaA PSPTO_1450 - COG0519F,COG0518F bifunctional GMP synthase/glutamine amidotransferase protein 1619184-1619441 + 85 28868680 rpsP PSPTO_1473 - - 30S ribosomal protein S16 1620789-1621139 + 116 28868683 rplS PSPTO_1476 - - 50S ribosomal protein L19 1658196-1659698 + 500 28868707 lysS PSPTO_1501 - COG1190J lysyl-tRNA synthetase 1663462-1664244 - 260 28868712 - PSPTO_1506 - COG2885M,COG1360N ompA family protein 1685429-1686463 - 344 28868734 - PSPTO_1528 - COG2171E tetrahydrodipicolinate succinylase, putative 1693557-1694300 + 247 28868740 rpsB PSPTO_1534 - - 30S ribosomal protein S2 1694491-1695354 + 287 28868741 tsf PSPTO_1535 - - elongation factor Ts 1696300-1696857 + 185 28868743 frr PSPTO_1537 - - ribosome releasing factor 1701189-1703576 + 795 28868748 - PSPTO_1542 - COG4775M outer membrane protein 1703622-1704125 + 167 28868749 - PSPTO_1543 - COG2825M outer membrane protein OmpH, putative 1717364-1718650 + 428 28868760 eno PSPTO_1554 - COG0148G phosphopyruvate hydratase 1753846-1754037 + 63 28868802 - PSPTO_1596 - - hypothetical protein 1840004-1842916 - 970 28868877 nrdA PSPTO_1671 - COG0209F ribonucleotide-diphosphate reductase alpha subunit 1852071-1853453 + 460 28868888 dctA-1 PSPTO_1682 - COG1301C C4-dicarboxylate transport protein 1857514-1857921 - 135 28868895 - PSPTO_1689 - COG3187O lipoprotein, putative 1868418-1869131 - 237 28868904 - PSPTO_1698 - - hypothetical protein 1869790-1870848 - 352 28868906 purM PSPTO_1700 - COG0150F phosphoribosylaminoimidazole synthetase 1913484-1916270 + 928 28868951 gyrA PSPTO_1745 - COG0188L DNA gyrase subunit A 1921117-1922808 + 563 28868956 rpsA PSPTO_1750 - COG0539J 30S ribosomal protein S1 1936301-1936870 + 189 28868971 efp PSPTO_1765 - COG0231J elongation factor P 1943997-1945685 + 562 28868981 - PSPTO_1775 - COG0513LKJ ATP-dependent RNA helicase, DEAD box family 2008266-2008778 - 170 28869044 ribH PSPTO_1839 - - riboflavin synthase subunit beta 2071848-2072111 + 87 28869099 - PSPTO_1895 - COG5591S hypothetical protein 2120090-2120878 + 262 28869144 flgG PSPTO_1940 - COG4786N flagellar basal-body rod protein FlgG 2135981-2136829 + 282 28869153 - PSPTO_1949 - COG1344N flagellin 2174064-2174543 + 159 28869192 cheW-2 PSPTO_1988 - COG0835NT chemotaxis protein CheW 2275390-2276838 + 482 28869306 gap-2 PSPTO_2102 - COG0057G glyceraldehyde-3-phosphate dehydrogenase 2326990-2327322 - 110 28869346 - PSPTO_2143 - - hypothetical protein 2407768-2408697 + 309 28869388 etfA-2 PSPTO_2186 - COG2025C electron transfer flavoprotein, alpha subunit 2416725-2418497 + 590 28869399 sdhA PSPTO_2197 - COG1053C succinate dehydrogenase 2418510-2419214 + 234 28869400 sdhB PSPTO_2198 - COG0479C succinate dehydrogenase catalytic subunit 2422347-2423567 + 406 28869402 sucB PSPTO_2200 - COG0508C dihydrolipoamide acetyltransferase 2423740-2425176 + 478 28869403 lpdA PSPTO_2201 - COG1249C dihydrolipoamide dehydrogenase 2425385-2426551 + 388 28869404 sucC PSPTO_2202 - COG0045C succinyl-CoA synthetase subunit beta 2426551-2427432 + 293 28869405 sucD PSPTO_2203 - COG0074C succinyl-CoA synthetase alpha subunit 2434906-2436129 - 407 28869412 fabB PSPTO_2210 - COG0304IQ 3-oxoacyl-(acyl carrier protein) synthase 2514998-2515249 - 83 28869472 oprI PSPTO_2272 - - outer membrane lipoprotein OprI 2542838-2543872 + 344 28869499 oprF PSPTO_2299 - COG2885M outer membrane porin OprF 2626181-2626393 - 70 28869573 - PSPTO_2376 - - cold shock domain family protein 2630125-2630481 + 118 28869578 rplT PSPTO_2381 - - 50S ribosomal protein L20 3024485-3024802 - 105 28869912 - PSPTO_2725 - COG3255I SCP-2 sterol transfer family protein 3038310-3038903 + 197 28869922 yhgI PSPTO_2735 - COG0316S,COG0694O yhgI protein 3061058-3061558 + 166 28869939 tpx PSPTO_2752 - COG2077O thiol peroxidase 3087525-3089090 - 521 28869952 - PSPTO_2766 - COG0488R ABC transporter, ATP-binding protein 3403680-3403961 + 93 28870204 ppiC-1 PSPTO_3028 - COG0760O peptidyl-prolyl cis-trans isomerase C 3411226-3411501 + 91 28870210 ppiC-2 PSPTO_3034 - COG0760O peptidyl-prolyl cis-trans isomerase C 3494562-3495125 - 187 28870281 ahpC PSPTO_3108 - COG0450O alkyl hydroperoxide reductase, subunit C 3500226-3501065 - 279 28870286 galU PSPTO_3113 - COG1210M UTP-glucose-1-phosphate uridylyltransferase 3691780-3692559 - 259 28870430 pstB-1 PSPTO_3266 - COG1117P phosphate ABC transporter, ATP-binding protein 3694517-3695542 - 341 28870433 pstS PSPTO_3269 - COG0226P phosphate ABC transporter, periplasmic phosphate-binding protein 3696039-3696323 + 94 28870434 - PSPTO_3270 - - hypothetical protein 3751384-3754125 + 913 28870482 - PSPTO_3318 - - beta-glucosidase 3793079-3795310 + 743 28870520 - PSPTO_3356 - - isocitrate dehydrogenase, NADP-dependent 3805020-3806801 + 593 28870531 nuoCD PSPTO_3367 - COG0649C NADH dehydrogenase I, C/D subunit 3852658-3852804 - 48 28870578 - PSPTO_3414 - - hypothetical protein 4040557-4042089 + 510 28870742 katB PSPTO_3582 - COG0753P catalase 4059714-4060538 + 274 28870759 - PSPTO_3599 - COG2822P hypothetical protein 4200823-4201617 + 264 28870876 fabI PSPTO_3721 - COG0623I enoyl-(acyl-carrier-protein) reductase 4203816-4204088 - 90 28870878 hupB PSPTO_3723 - - DNA-binding protein HU-beta 4206842-4208125 - 427 28870880 clpX PSPTO_3725 - COG1219O ATP-dependent protease ATP-binding subunit 4208965-4210275 - 436 28870882 tig PSPTO_3727 - COG0544O trigger factor 4229193-4230902 - 569 28870898 glnS PSPTO_3743 - COG0008J glutaminyl-tRNA synthetase 4231095-4231598 + 167 28870899 ppiB PSPTO_3744 - COG0652O peptidyl-prolyl cis-trans isomerase B 4239241-4241841 + 866 28870907 acnB PSPTO_3752 - COG1049C aconitate hydratase 4339190-4339426 - 78 28870985 acpP PSPTO_3831 - COG0236IQ acyl carrier protein 4342460-4342642 - 60 28870989 rpmF PSPTO_3835 - COG0333J 50S ribosomal protein L32 4347221-4350607 + 1128 28870994 - PSPTO_3841 - COG1530J ribonuclease, Rne/Rng family protein 4458800-4459510 - 236 28871097 purC PSPTO_3950 - - phosphoribosylaminoimidazole-succinocarboxamide synthase 4478908-4479408 - 166 28871116 pal PSPTO_3971 - COG2885M peptidoglycan-associated lipoprotein 4486896-4488671 - 591 28871126 aspS PSPTO_3981 - COG0173J aspartyl-tRNA synthetase 4534415-4535194 - 259 28871167 fnr-1 PSPTO_4024 - COG1018C ferredoxin--NADP reductase 4540716-4541780 - 354 28871176 recA PSPTO_4033 - COG0468L recombinase A 4557596-4558348 - 250 28871193 - PSPTO_4050 - - hypothetical protein 4631636-4632760 + 374 28871250 - PSPTO_4108 - COG0683E high-affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein 4663235-4664017 + 260 28871278 - PSPTO_4136 - COG0834ET amino acid ABC transporter, periplasmic amino acid-binding protein 4672279-4672488 + 69 28871287 capB PSPTO_4145 - - cold shock protein CapB 4682334-4683551 - 405 28871297 argG PSPTO_4155 - COG0137E argininosuccinate synthase 4865912-4866292 + 126 28871452 - PSPTO_4315 - - transcriptional regulator, putative 4887159-4888610 + 483 28871474 pyk PSPTO_4337 - - pyruvate kinase 4925003-4925584 + 193 28871499 sodB PSPTO_4363 - COG0605P superoxide dismutase, Fe 4928198-4929556 + 452 28871502 - PSPTO_4366 - COG3487P iron-regulated protein A, putative 4938343-4939986 - 547 28871512 groEL PSPTO_4376 - COG0459O chaperonin GroEL 4940036-4940329 - 97 28871513 groES PSPTO_4377 - COG0234O co-chaperonin GroES 4957313-4957792 - 159 28871528 - PSPTO_4393 - - hypothetical protein 4969322-4970509 - 395 28871538 ftsZ PSPTO_4403 - COG0206D cell division protein FtsZ 4992922-4993314 - 130 28871560 rpsI PSPTO_4425 - - 30S ribosomal protein S9 4993329-4993757 - 142 28871561 rplM PSPTO_4426 - - 50S ribosomal protein L13 5036351-5037388 - 345 28871607 mreB PSPTO_4472 - COG1077D rod shape-determining protein MreB 5039359-5040804 + 481 28871610 gatB PSPTO_4475 - COG0064J aspartyl/glutamyl-tRNA amidotransferase subunit B 5050151-5050504 - 117 28871619 - PSPTO_4484 - COG2823R hypothetical protein 5052402-5054507 - 701 28871621 pnp PSPTO_4486 - COG1185J polyribonucleotide nucleotidyltransferase 5054683-5054952 - 89 28871622 rpsO PSPTO_4487 - - 30S ribosomal protein S15 5056608-5059133 - 841 28871624 infB PSPTO_4490 - COG0532J translation initiation factor IF-2 5068738-5071959 - 1073 28871635 carB PSPTO_4501 - COG0458EF carbamoyl-phosphate synthase large subunit 5075741-5077657 - 638 28871639 dnaK PSPTO_4505 - COG0443O molecular chaperone DnaK 5139135-5140046 - 303 28871683 - PSPTO_4549 - COG0329EM putative 5-dehydro-4-deoxyglucarate dehydratase 5153159-5154538 + 459 28871694 - PSPTO_4560 - - outer membrane porin, OprD family 5167536-5168615 - 359 28871704 - PSPTO_4572 - COG0019E pyridoxal-dependent decarboxylase, pyridoxal binding domain 5234654-5235907 + 417 28871764 glyA-2 PSPTO_4632 - COG0112E serine hydroxymethyltransferase 5275543-5275791 + 82 28871805 - PSPTO_4673 - - hypothetical protein 5456472-5457428 - 318 28871933 lipA PSPTO_4818 - COG0320H lipoyl synthase 5458494-5459654 - 386 28871936 - PSPTO_4821 - COG1686M D-alanyl-D-alanine carboxypeptidase 5465486-5465857 - 123 28871942 - PSPTO_4827 - - iojap-related protein 5505070-5505525 + 151 28871975 accB PSPTO_4860 - COG0511I acetyl-CoA carboxylase 5505543-5506886 + 447 28871976 accC-2 PSPTO_4861 - COG0439I acetyl-CoA carboxylase 5511016-5512620 + 534 28871981 purH PSPTO_4866 - - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5535156-5536421 + 421 28872000 - PSPTO_4885 - COG0683E branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein 5587055-5587501 - 148 28872044 rplI PSPTO_4930 - COG0359J 50S ribosomal protein L9 5588457-5588687 - 76 28872046 rpsR PSPTO_4932 - - 30S ribosomal protein S18 5588716-5589141 - 141 28872047 rpsF PSPTO_4933 - COG0360J 30S ribosomal protein S6 5595509-5596801 - 430 28872051 purA PSPTO_4937 - - adenylosuccinate synthetase 5686694-5689339 + 881 28872119 aceE-2 PSPTO_5005 - COG2609C pyruvate dehydrogenase, E1 component 5689482-5691128 + 548 28872120 aceF PSPTO_5006 - COG0508C dihydrolipoamide acetyltransferase 5736905-5737864 + 319 28872149 gshB PSPTO_5035 - COG0189HJ glutathione synthetase 5759478-5761325 - 615 28872170 ilvD PSPTO_5057 - - dihydroxy-acid dehydratase 5763742-5764647 + 301 28872173 - PSPTO_5060 - COG2084I oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor 5771439-5772848 + 469 28872181 ahcY PSPTO_5068 - COG0499H S-adenosyl-L-homocysteine hydrolase 5776365-5776943 - 192 28872184 - PSPTO_5071 - - hypothetical protein 5827318-5831763 - 1481 28872236 gltB PSPTO_5123 - COG0069E,COG0070E,COG0067E glutamate synthase, large subunit 5843502-5844770 - 422 28872247 - PSPTO_5134 - COG0281C malic enzyme family protein 5845754-5845981 - 75 28872249 rpmE-2 PSPTO_5136 - COG0254J ribosomal protein L31 5851651-5852988 + 445 28872254 hslU PSPTO_5141 - COG1220O ATP-dependent protease ATP-binding subunit 5885038-5886048 + 336 28872280 fbp PSPTO_5168 - COG0158G fructose-1,6-bisphosphatase 5913818-5914837 - 339 28872307 - PSPTO_5195 - COG0715P ABC transporter, periplasmic substrate-binding protein 5938115-5938897 - 260 28872328 - PSPTO_5216 - COG1464P lipoprotein, NLPA family 5961653-5962912 - 419 28872354 rho PSPTO_5242 - COG1158K transcription termination factor Rho 6015042-6015713 + 223 28872401 rpiA PSPTO_5289 - COG0120G ribose-5-phosphate isomerase A 6020179-6021408 + 409 28872406 serA PSPTO_5294 - COG0111HE D-3-phosphoglycerate dehydrogenase 6034164-6035261 - 365 28872419 - PSPTO_5307 - COG0687E putrescine ABC transporter, periplasmic putrescine-binding protein 6042702-6042917 - 71 28872425 - PSPTO_5313 - COG3585H molybdenum-pterin binding domain protein 6046664-6048010 - 448 28872430 - PSPTO_5318 - - outer membrane porin, OprD family 6052712-6053206 - 164 28872436 secB PSPTO_5324 - COG1952U export protein SecB 6083709-6083987 + 92 28872462 - PSPTO_5351 - - lipoprotein, putative 6124134-6125012 - 292 28872502 - PSPTO_5394 - COG0388R carbon-nitrogen hydrolase family protein 6176718-6178196 - 492 28872540 - PSPTO_5432 - - hypothetical protein 6181106-6181624 + 172 28872543 hcp-2 PSPTO_5435 - - secreted protein Hcp 6232666-6233094 - 142 28872576 - PSPTO_5471 - - hypothetical protein 6284450-6285292 + 280 28872622 - PSPTO_5517 - COG4395S hypothetical protein 6381349-6382728 - 459 28872698 atpD PSPTO_5599 - COG0055C ATP synthase subunit B 6383667-6385211 - 514 28872700 atpA PSPTO_5601 - COG0056C ATP synthase subunit A