Roseobacter denitrificans OCh 114, complete genome - 1..4133097 Location Strand Length PID Gene Synonym Code COG Product 106396-106554 - 52 110677520 pufA RD1_0106 - - light-harvesting protein B-875, alpha chain 106901-107134 - 77 110677522 pufQ RD1_0108 - - protein pufQ 110444-111448 - 334 110677525 bchX RD1_0111 - - chlorophyllide reductase subunit X 126413-127627 - 404 110677541 hemA RD1_0127 - - 5-aminolevulinic acid synthase 128440-129477 - 345 110677543 acsF RD1_0129 - - magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase 173380-174486 + 368 110677585 - RD1_0175 - - ABC transporter, substrate-binding protein, putative 193514-195109 + 531 110677605 serA RD1_0197 - - D-3-phosphoglycerate dehydrogenase 211946-212263 - 105 110677621 - RD1_0213 - - thioredoxin, putative 272377-273483 - 368 110677684 potD RD1_0280 - - spermidine/putrescine-binding periplasmic protein, putative 295514-296536 + 340 110677709 asd RD1_0306 - - aspartate-semialdehyde dehydrogenase 417902-418513 + 203 110677821 - RD1_0427 - - Ham1 protein-like protein 437073-437393 - 106 110677843 trxA RD1_0451 - - thioredoxin 618906-621041 - 711 110678016 pnp RD1_0637 - - polyribonucleotide nucleotidyltransferase 699363-699848 - 161 110678092 - RD1_0722 - - hypothetical protein 747428-749059 - 543 110678132 groL RD1_0772 - - chaperonin GroEL protein, putative 749090-749401 - 103 110678133 groES RD1_0773 - - chaperonin, 10 kDa 806289-808070 - 593 110678180 xsc RD1_0826 - - sulfoacetaldehyde acetyltransferase 809517-809903 - 128 110678182 tauX RD1_0829 - - taurine dehydrogenase small 812426-813442 - 338 110678186 tauK RD1_0833 - - periplasmic substrate-binding transport protein, putative 881931-882401 + 156 110678256 - RD1_0909 - - hypothetical protein 906809-907147 - 112 110678284 glnB RD1_0937 - - nitrogen regulatory protein P-II, putative 937364-938122 - 252 110678320 - RD1_0974 - - 4Fe-4S binding domain protein 938208-941027 - 939 110678321 phsA RD1_0975 - - thiosulfate reductase, putative 941444-943222 - 592 110678323 xsc RD1_0977 - - sulphoacetaldehyde acetyltransferase 946277-947668 - 463 110678327 tpa RD1_0981 - - taurine--pyruvate aminotransferase 959637-959963 - 108 110678339 - RD1_0995 - - hypothetical protein 968353-968664 - 103 110678350 - RD1_1006 - - hypothetical protein 971357-971557 + 66 110678353 rpmI RD1_1009 - - ribosomal protein L35 971570-971935 + 121 110678354 rplT RD1_1010 - - ribosomal protein L20 1008501-1008845 - 114 110678388 - RD1_1046 - - hypothetical protein 1115371-1115478 - 35 110678484 pqqA RD1_1154 - - coenzyme PQQ synthesis protein A 1201858-1203513 - 551 110678564 - RD1_1237 - - ABC transporter, ATP-binding protein, putative 1212509-1213018 - 169 110678577 - RD1_1251 - - hypothetical protein 1213116-1213604 - 162 110678578 - RD1_1252 - - hypothetical protein 1214822-1217020 - 732 110678580 uvrB RD1_1254 - - excinuclease ABC, B subunit 1266354-1266722 - 122 110678634 rpsP RD1_1311 - - ribosomal protein S16 1267153-1267758 - 201 110678636 - RD1_1313 - - acetyltransferase, GNAT family 1268291-1269808 - 505 110678638 - RD1_1315 - - signal recognition particle protein, putative 1339709-1340884 + 391 110678715 tufA RD1_1396 - - translation elongation factor Tu 1343404-1344021 + 205 110678719 rplD RD1_1400 - - ribosomal protein L4 1344018-1344314 + 98 110678720 rplW RD1_1401 - - ribosomal protein L23 1348391-1349098 + 235 110678727 rpsC RD1_1408 - - ribosomal protein S3 1356064-1356432 + 122 110678738 rplN RD1_1420 - - ribosomal protein L14 1356435-1356746 + 103 110678739 rplX RD1_1421 - - ribosomal protein L24 1357641-1358033 + 130 110678742 rpsH RD1_1424 - - ribosomal protein S8 1358044-1358577 + 177 110678743 rplF RD1_1425 - - ribosomal protein L6 1359055-1359630 + 191 110678745 rpsE RD1_1428 - - ribosomal protein S5 1359643-1359831 + 62 110678746 rpmD RD1_1429 - - ribosomal protein L30 1361396-1361878 + 160 110678748 rplO RD1_1431 - - ribosomal protein L15 1365537-1365905 + 122 110678752 rpsM RD1_1435 - - ribosomal protein S13 1380048-1380698 - 216 110678769 - RD1_1453 - - GTP-binding protein 1435626-1435958 + 110 110678825 soxZ RD1_1513 - - sulfur oxidation Z protein 1488045-1489742 + 565 110678872 nirS RD1_1565 - - nitrite reductase 1547115-1548503 - 462 110678909 lpdA RD1_1603 - - dihydrolipoamide dehydrogenase 1559670-1560632 - 320 110678923 mdh RD1_1617 - - malate dehydrogenase 1593377-1593619 - 80 110678962 - RD1_1658 - - hypothetical protein 1610609-1611172 - 187 110678978 - RD1_1675 - - hypothetical protein 1620581-1620799 + 72 110678988 infA RD1_1685 - - translation initiation factor IF-1 1681228-1684323 - 1031 110679054 valS RD1_1754 - - valyl-tRNA synthetase 1684399-1684998 - 199 110679055 - RD1_1756 - - hypothetical protein 1749442-1749780 + 112 110679119 fdxA RD1_1824 - - ferredoxin II 1867283-1868305 - 340 110679241 ilvC RD1_1954 - - ketol-acid reductoisomerase 2071596-2072627 - 343 110679448 - RD1_2174 - - periplasmic mannitol-binding protein, putative 2160211-2160909 - 232 110679524 mtbC RD1_2258 - - dimethylamine corrinoid protein, putative 2162282-2162596 - 104 110679526 - RD1_2261 - - hypothetical protein 2175576-2175983 - 135 110679541 - RD1_2277 - - hypothetical protein 2251724-2251996 - 90 110679609 grxC RD1_2354 - - glutaredoxin 3 2252048-2252548 - 166 110679610 - RD1_2355 - - hypothetical protein 2290535-2291446 - 303 110679651 - RD1_2402 - - phosphonate ABC transporter, periplasmic phosphonate-binding protein 2457282-2458685 - 467 110679805 glnA RD1_2569 - - glutamine synthetase, type I 2495186-2495677 - 163 110679841 rspI RD1_2612 - - ribosomal protein S9, putative 2567259-2568014 - 251 110679914 sufC RD1_2694 - - FeS assembly ATPase SufC 2568490-2570028 - 512 110679916 sufB RD1_2696 - - FeS assembly protein SufB 2676039-2676716 - 225 110680015 - RD1_2807 - - hypothetical protein 2713364-2714716 + 450 110680048 - RD1_2843 - - branched-chain amino acid ABC transporter, periplasmic binding protein, putative 2775421-2776017 - 198 110680099 fdhB RD1_2896 - - formate dehydrogenase Fe-S subunit 2784137-2784334 + 65 110680108 - RD1_2905 - - hypothetical protein 2838162-2838506 + 114 110680159 hesB RD1_2960 - - HesB-like iron-sulfur cluster assembly protein, putative 2855880-2856272 - 130 110680179 - RD1_2980 - - hypothetical protein 2914021-2914248 + 75 110680236 rpsR RD1_3044 - - ribosomal protein S18 2916749-2918080 - 443 110680241 tig RD1_3049 - - trigger factor (TF), putative 3028104-3028310 + 68 110680341 - RD1_3154 - - ribosomal protein L32-related protein 3057624-3061268 - 1214 110680377 nrdJ RD1_3193 - - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 3197980-3199491 + 503 110680511 gatB RD1_3333 - - glutamyl-tRNA(Gln) amidotransferase, B subunit 3203245-3204231 + 328 110680517 cobS RD1_3339 - - aerobic cobaltochelatase CobS subunit 3241747-3245187 + 1146 110680549 pyc RD1_3376 - - pyruvate carboxylase 3258629-3259249 - 206 110680562 rpsD RD1_3391 - - ribosomal protein S4 3263175-3263294 - 39 110680567 - RD1_3396 - - hypothetical protein 3378695-3380338 - 547 110680677 groL1 RD1_3516 - - 60 kDa chaperonin 1, putative 3394440-3394856 - 138 110680692 atpC RD1_3532 - - ATP synthase F1, epsilon subunit 3526289-3528961 - 890 110680817 dmsA RD1_3664 - - dimethyl sulfoxide reductase 3536028-3536300 - 90 110680823 grxC RD1_3671 - - glutaredoxin 3 3536352-3536852 - 166 110680824 - RD1_3672 - - hypothetical protein 3625447-3627078 + 543 110680889 - RD1_3740 - - solute-binding protein, putative 3775061-3776740 - 559 110681047 rpsA RD1_3911 - - ribosomal protein S1 3790806-3790919 + 37 110681062 - RD1_3926 - - hypothetical protein 3829356-3830567 + 403 110681105 fadA RD1_3972 - - fatty acid oxidation complex beta subunit 3849125-3850420 + 431 110681120 glyA RD1_3991 - - serine hydroxymethyltransferase 3866170-3867345 - 391 110681138 tuf RD1_4012 - - translation elongation factor Tu 3869606-3870076 - 156 110681140 rpsG RD1_4014 - - ribosomal protein S7, putative 3871950-3876194 - 1414 110681144 rpoC RD1_4018 - - DNA-directed RNA polymerase, beta' subunit 3880888-3881259 - 123 110681146 rplL RD1_4020 - - ribosomal protein L7/L12 3882089-3882787 - 232 110681148 rplA RD1_4022 - - ribosomal protein L1 3882789-3883214 - 141 110681149 rplK RD1_4023 - - ribosomal protein L11 3912658-3914691 + 677 110681176 hsdM RD1_4053 - - type I restriction-modification system DNA methylase, putative 3930734-3930928 + 64 110681189 - RD1_4066 - - hypothetical protein 4005403-4005819 + 138 110681257 - RD1_4138 - - endoribonuclease L-PSP family protein, putative 4111653-4113329 + 558 110681350 fhs RD1_4235 - - formate--tetrahydrofolate ligase 4127012-4128307 + 431 110681363 glyA RD1_4249 - - serine hydroxymethyltransferase 4129856-4131196 - 446 110681365 - RD1_4251 - - glutamate synthase family protein, putative