Silicibacter sp. TM1040, complete genome - 1..3200938 Location Strand Length PID Gene Synonym Code COG Product 10577-12505 - 642 99079851 - TM1040_0010 - COG0443O Chaperone DnaK 50494-51438 + 314 99079888 - TM1040_0047 - - outer membrane porin 81035-83170 - 711 99079919 - TM1040_0078 - COG1185J Polyribonucleotide nucleotidyltransferase 85005-85274 - 89 99079922 - TM1040_0081 - - ribosomal protein S15 131939-132949 - 336 99079965 - TM1040_0124 - COG1840P extracellular solute-binding protein, family 1 218325-220001 + 558 99080041 - TM1040_0200 - COG0539J ribosomal protein S1 231708-232337 - 209 99080057 - TM1040_0216 - COG1825J ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 243929-244354 + 141 99080070 - TM1040_0229 - - ribosomal protein L11 244356-245054 + 232 99080071 - TM1040_0230 - - ribosomal protein L1 247040-247417 + 125 99080074 - TM1040_0233 - COG0222J ribosomal protein L7/L12 247712-251851 + 1379 99080075 - TM1040_0234 - COG0085K DNA-directed RNA polymerase, beta subunit 251905-256137 + 1410 99080076 - TM1040_0235 - COG0086K DNA-directed RNA polymerase, subunit beta-prime 259995-262115 + 706 99080082 - TM1040_0241 - COG0480J translation elongation factor G 262178-263353 + 391 99080083 - TM1040_0242 - COG0050J translation elongation factor Tu 265996-266613 + 205 99080088 - TM1040_0247 - - ribosomal protein L4/L1e 266610-266906 + 98 99080089 - TM1040_0248 - COG0089J Ribosomal protein L25/L23 270063-270443 + 126 99080095 - TM1040_0254 - - ribosomal protein L22 270443-271162 + 239 99080096 - TM1040_0255 - COG0092J ribosomal protein S3 275991-276221 + 76 99080104 - TM1040_0263 - COG0186J ribosomal protein S17 276995-277558 + 187 99080107 - TM1040_0266 - COG0094J ribosomal protein L5 277577-277882 + 101 99080108 - TM1040_0267 - COG0199J ribosomal protein S14 278303-278836 + 177 99080110 - TM1040_0269 - COG0097J ribosomal protein L6 278848-279207 + 119 99080111 - TM1040_0270 - COG0256J ribosomal protein L18 279375-279938 + 187 99080112 - TM1040_0271 - COG0098J ribosomal protein S5 279951-280139 + 62 99080113 - TM1040_0272 - COG1841J ribosomal protein L30 280364-280579 + 71 99080114 - TM1040_0273 - - protein of unknown function DUF1127 281136-281606 + 156 99080115 - TM1040_0274 - COG0200J ribosomal protein L15 283078-283659 + 193 99080117 - TM1040_0276 - COG0563F adenylate kinases 284068-284436 + 122 99080118 - TM1040_0277 - COG0099J ribosomal protein S13 284453-284842 + 129 99080119 - TM1040_0278 - COG0100J ribosomal protein S11 284956-285972 + 338 99080120 - TM1040_0279 - COG0202K DNA-directed RNA polymerase, alpha subunit 286119-286544 + 141 99080121 - TM1040_0280 - COG0203J ribosomal protein L17 300335-301351 + 338 99080135 - TM1040_0294 - COG0834ET Lysine-arginine-ornithine-binding periplasmic protein 307007-307867 - 286 99080142 - TM1040_0301 - COG0548E acetylglutamate kinase 310715-311365 - 216 99080146 - TM1040_0305 - COG0218R GTP-binding 318476-318610 - 44 99080154 - TM1040_0313 - - ribosomal protein L34 392070-392297 - 75 99080224 - TM1040_0383 - - hypothetical protein 497149-499365 - 738 99080318 - TM1040_0477 - - isocitrate dehydrogenase, NADP-dependent 507703-510210 + 835 99080327 - TM1040_0486 - COG0665E,COG0404E FAD dependent oxidoreductase 515592-516668 - 358 99080334 - TM1040_0493 - COG1744R basic membrane lipoprotein 545281-547413 - 710 99080360 - TM1040_0519 - COG0209F Ribonucleoside-diphosphate reductase, alpha subunit 633408-634328 - 306 99080433 - TM1040_0592 - COG1227C Inorganic diphosphatase 637635-637922 + 95 99080437 - TM1040_0596 - COG0234O chaperonin Cpn10 637983-639626 + 547 99080438 - TM1040_0597 - COG0459O chaperonin GroEL 650528-652246 - 572 99080453 - TM1040_0612 - COG0529P sulfate adenylyltransferase 677748-679532 + 594 99080476 - TM1040_0635 - COG0173J aspartyl-tRNA synthetase 749516-751024 - 502 99080542 - TM1040_0701 - COG0064J glutamyl-tRNA(Gln) amidotransferase, B subunit 769931-771628 - 565 99080556 - TM1040_0715 - COG0747E extracellular solute-binding protein, family 5 800625-801230 + 201 99080584 - TM1040_0743 - - NADH (or F420H2) dehydrogenase, subunit C 852931-853899 + 322 99080646 - TM1040_0805 - - hypothetical protein 901433-902737 + 434 99080690 - TM1040_0849 - COG1653G extracellular solute-binding protein, family 1 936737-937822 + 361 99080719 - TM1040_0878 - COG4663Q Twin-arginine translocation pathway signal 952013-953197 - 394 99080732 - TM1040_0891 - COG3825S hypothetical protein 978169-978375 - 68 99080757 - TM1040_0916 - COG0333J ribosomal protein L32 994521-995798 + 425 99080772 - TM1040_0931 - COG0148G Phosphopyruvate hydratase 1023097-1023519 + 140 99080798 - TM1040_0957 - - Nucleoside-diphosphate kinase 1037333-1037665 + 110 99080811 - TM1040_0970 - - Sarcosine oxidase, delta subunit, heterotetrameric 1043026-1043625 + 199 99080817 - TM1040_0976 - COG0605P Superoxide dismutase 1067792-1068076 + 94 99080836 - TM1040_0995 - COG1862U preprotein translocase, YajC subunit 1082157-1083461 - 434 99080852 - TM1040_1011 - COG0015F adenylosuccinate lyase 1093375-1094781 - 468 99080863 - TM1040_1022 - - glutamine synthetase, type I 1097776-1100565 + 929 99080867 - TM1040_1026 - COG1049C aconitate hydratase 2 1112761-1114092 + 443 99080874 - TM1040_1033 - COG0544O trigger factor 1123604-1124218 - 204 99080884 - TM1040_1043 - COG0359J ribosomal protein L9 1124232-1124459 - 75 99080885 - TM1040_1044 - - ribosomal protein S18 1124490-1124843 - 117 99080886 - TM1040_1045 - COG0360J ribosomal protein S6 1126045-1126620 + 191 99080888 - TM1040_1047 - - YceI 1131343-1131576 + 77 99080893 - TM1040_1052 - COG0236IQ acyl carrier protein 1150412-1150618 - 68 99080915 - TM1040_1074 - - cold-shock DNA-binding domain protein 1152399-1153739 - 446 99080918 - TM1040_1077 - COG0508C Dihydrolipoamide acetyltransferase, long form 1153751-1155127 - 458 99080919 - TM1040_1078 - COG0508C,COG0022C Transketolase, central region 1155145-1156158 - 337 99080920 - TM1040_1079 - COG1071C Pyruvate dehydrogenase (lipoamide) 1161321-1161827 + 168 99080926 - TM1040_1085 - COG0652O peptidyl-prolyl cis-trans isomerase, cyclophilin type 1163480-1164001 - 173 99080929 - TM1040_1088 - COG1664M protein of unknown function DUF583 1188053-1189552 - 499 99080947 - TM1040_1106 - COG1012C methylmalonate-semialdehyde dehydrogenase 1192007-1193008 - 333 99080952 - TM1040_1111 - COG0057G glyceraldehyde-3-phosphate dehydrogenase, type I 1194349-1196370 - 673 99080954 - TM1040_1113 - COG0021G transketolase 1198356-1198718 - 120 99080957 - TM1040_1116 - COG0278O Glutaredoxin-related protein 1199086-1199322 - 78 99080958 - TM1040_1117 - COG0271T BolA-like protein 1216941-1218236 - 431 99080973 - TM1040_1132 - COG0372C Citrate synthase I 1299082-1299852 + 256 99081051 - TM1040_1210 - - ribosomal protein S2 1299933-1300808 + 291 99081052 - TM1040_1211 - - translation elongation factor Ts 1347286-1348257 - 323 99081093 - TM1040_1252 - COG2358R TRAP transporter solute receptor, TAXI family 1359739-1360779 - 346 99081103 - TM1040_1262 - COG0226P phosphate ABC transporter, periplasmic phosphate-binding protein 1479063-1479548 - 161 99081225 - TM1040_1384 - - ribosomal protein S9 1479554-1480012 - 152 99081226 - TM1040_1385 - - ribosomal protein L13 1506544-1507107 - 187 99081254 - TM1040_1413 - - ribosome recycling factor 1510334-1512001 + 555 99081258 - TM1040_1417 - COG0747E Twin-arginine translocation pathway signal 1550169-1551566 + 465 99081293 - TM1040_1452 - COG0114C fumarate hydratase, class II 1571618-1572316 + 232 99081311 - TM1040_1470 - COG5012R 5-methyltetrahydrofolate--homocysteine S-methyltransferase 1609074-1609340 - 88 99081343 - TM1040_1502 - - hypothetical protein 1617419-1618765 + 448 99081352 - TM1040_1511 - COG0683E Twin-arginine translocation pathway signal 1688939-1690234 + 431 99081420 - TM1040_1579 - COG0112E Glycine hydroxymethyltransferase 1767772-1768983 - 403 99081509 - TM1040_1668 - - phage major capsid protein, HK97 1810083-1810790 + 235 99081553 - TM1040_1712 - COG0834ET extracellular solute-binding protein, family 3 1848717-1850384 + 555 99081599 - TM1040_1758 - COG0155P nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like 1905025-1906029 - 334 99081654 - TM1040_1813 - COG1638G TRAP dicarboxylate transporter, DctP subunit 1914075-1915658 + 527 99081661 - TM1040_1820 - COG0747E Twin-arginine translocation pathway signal 1917425-1919062 + 545 99081664 - TM1040_1823 - COG1123R ABC transporter related 1952289-1953644 - 451 99081693 - TM1040_1852 - COG0442J prolyl-tRNA synthetase 1972602-1972745 - 47 99081714 - TM1040_1873 - - lipoprotein, putative 1984236-1985444 - 402 99081725 - TM1040_1884 - COG1292M hypothetical protein 1994121-1994750 - 209 99081734 - TM1040_1893 - - protein of unknown function DUF28 2016984-2017151 - 55 99081756 - TM1040_1915 - COG0267J ribosomal protein L33 2073570-2074883 - 437 99081809 - TM1040_1969 - - Adenylosuccinate synthase 2077611-2079254 + 547 99081813 - TM1040_1973 - COG0504F CTP synthase 2080346-2081248 + 300 99081816 - TM1040_1976 - COG3588G Fructose-bisphosphate aldolase 2091657-2092220 - 187 99081827 - TM1040_1987 - COG0231J translation elongation factor P 2133373-2133807 - 144 99081867 - TM1040_2027 - - BLUF domain protein 2134246-2137686 + 1146 99081868 - TM1040_2028 - COG1038C pyruvate carboxylase 2140200-2141552 + 450 99081871 - TM1040_2031 - COG0161H aminotransferase class-III 2142137-2142724 + 195 99081873 - TM1040_2033 - - Imidazoleglycerol-phosphate dehydratase 2178130-2179152 + 340 99081915 - TM1040_2075 - COG0462FE ribose-phosphate pyrophosphokinase 2189250-2190674 - 474 99081926 - TM1040_2086 - COG0055C ATP synthase F1, beta subunit 2191586-2193127 - 513 99081928 - TM1040_2088 - COG0056C ATP synthase F1, alpha subunit 2211714-2212334 - 206 99081947 - TM1040_2107 - COG0522J RNA-binding S4 2274543-2275526 + 327 99082005 - TM1040_2165 - - fructose-1,6-bisphosphatase, class II 2370043-2371710 - 555 99082095 - TM1040_2255 - COG0488R ABC transporter related 2375821-2377464 + 547 99082101 - TM1040_2261 - COG1384J lysyl-tRNA synthetase 2390226-2391551 - 441 99082115 - TM1040_2275 - COG0008J glutamyl-tRNA synthetase 2409675-2411333 + 552 99082131 - TM1040_2291 - COG0843C Cytochrome-c oxidase 2412716-2413876 + 386 99082134 - TM1040_2294 - COG0505EF carbamoyl-phosphate synthase, small subunit 2421204-2422226 + 340 99082143 - TM1040_2303 - COG0059EH ketol-acid reductoisomerase 2452530-2453345 - 271 99082172 - TM1040_2332 - COG1845C cytochrome c oxidase, subunit III 2462335-2463039 + 234 99082180 - TM1040_2340 - COG1788I 3-oxoacid CoA-transferase, subunit A 2478640-2480316 - 558 99082198 - TM1040_2358 - COG2759F Formate--tetrahydrofolate ligase 2499963-2500616 + 217 99082219 - TM1040_2379 - - transaldolase, putative 2515630-2515989 - 119 99082232 - TM1040_2392 - COG0509E glycine cleavage system H protein 2556474-2558207 + 577 99082256 - TM1040_2416 - COG1653G extracellular solute-binding protein, family 1 2574242-2575417 + 391 99082274 - TM1040_2434 - COG0050J translation elongation factor Tu 2647306-2647665 - 119 99082346 - TM1040_2506 - - Iojap-related protein 2649508-2650911 + 467 99082348 - TM1040_2508 - - 3-isopropylmalate dehydratase, large subunit 2654320-2654685 - 121 99082353 - TM1040_2513 - - ribosomal protein L20 2659018-2659224 + 68 99082359 - TM1040_2519 - COG0828J ribosomal protein S21 2717810-2718334 - 174 99082420 - TM1040_2580 - - Peptide deformylase 2742212-2742817 + 201 99082445 - TM1040_2605 - COG1670J hypothetical protein 2743178-2743543 + 121 99082447 - TM1040_2607 - - ribosomal protein S16 2747330-2747662 + 110 99082453 - TM1040_2613 - - protein of unknown function DUF1508 2749710-2750081 + 123 99082456 - TM1040_2616 - - ribosomal protein L19 2750093-2750314 + 73 99082457 - TM1040_2617 - COG0254J ribosomal protein L31 2756189-2757139 + 316 99082463 - TM1040_2623 - COG0491R beta-lactamase-like 2766222-2766989 + 255 99082472 - TM1040_2632 - - protein of unknown function DUF1013 2768685-2769869 + 394 99082475 - TM1040_2635 - COG1448E Aromatic amino acid transferase 2777471-2778172 - 233 99082483 - TM1040_2643 - COG1651O thiol:disulfide interchange protein, DsbA family 2812060-2813022 - 320 99082516 - TM1040_2676 - COG0777I acetyl-CoA carboxylase, carboxyl transferase, beta subunit 2857581-2859170 - 529 99082553 - TM1040_2713 - COG0747E extracellular solute-binding protein, family 5 2898076-2899119 + 347 99082590 - TM1040_2750 - COG1638G TRAP dicarboxylate transporter, DctP subunit 2963731-2964024 + 97 99082641 - TM1040_2801 - - histone-like DNA-binding protein 3027115-3027609 + 164 99082697 - TM1040_2857 - COG1952U protein-export protein SecB 3153256-3154362 + 368 99082828 - TM1040_2988 - COG0687E polyamine ABC trasnporter, periplasmic polyamine-binding protein