Salmonella typhimurium LT2, complete genome - 1..4857432 Location Strand Length PID Gene Synonym Code COG Product 190-255 + 21 16763391 thrL STM0001 - - thr operon leader peptide 7665-8618 + 317 16763397 talB STM0007 - - transaldolase 11593-13509 + 638 16763402 dnaK STM0012 - COG0443O molecular chaperone DnaK 17867-19966 + 699 16763408 - STM0018 - COG3979R putative exochitinase 77047-80274 + 1075 16763457 carB STM0067 - COG0458EF carbamoyl-phosphate synthase large subunit 155683-156834 + 383 16763523 ftsZ STM0133 - COG0206D cell division protein FtsZ 158689-161394 + 901 16763526 secA STM0136 - COG0653U translocase 176240-178903 + 887 16763542 aceE STM0152 - COG2609C pyruvate dehydrogenase E1 component 178918-180807 + 629 16763543 aceF STM0153 - COG0508C dihydrolipoamide acetyltransferase 181007-182431 + 474 16763544 lpdA STM0154 - COG1249C dihydrolipoamide dehydrogenase 185857-188454 + 865 16763548 acnB STM0158 - COG1049C aconitate hydratase 211031-211411 - 126 16763570 panD STM0180 - - aspartate 1-decarboxylase precursor 230657-231217 + 186 16763585 stfA STM0195 - COG3539NU putative fimbrial subunit 240164-240508 + 114 39546289 yadR STM0204.S - COG0316S hypothetical protein 249289-250113 - 274 16763603 dapD STM0213 - COG2171E 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 253052-253846 - 264 16763605 map STM0215 - COG0024J methionine aminopeptidase 254297-255022 + 241 16763606 rpsB STM0216 - - 30S ribosomal protein S2 255280-256131 + 283 16763607 tsf STM0217 - - elongation factor Ts 256276-257001 + 241 16763608 pyrH STM0218 - COG0528F uridylate kinase 257148-257705 + 185 16763609 frr STM0219 - - ribosome releasing factor 282467-284185 - 572 16763631 proS STM0242 - COG0442J prolyl-tRNA synthetase 285523-286338 - 271 16763634 yaeC STM0245 - COG1464P putative outer membrane lipoprotein 316893-317378 + 161 16763659 - STM0276 - - putative cytoplasmic protein 458073-458675 - 200 16763782 - STM0402 - COG0450O putative thiol-alkyl hydroperoxide reductase 461971-462303 + 110 16763786 yajC STM0406 - COG1862U preprotein translocase subunit YajC 467537-468400 - 287 16763793 tsx STM0413 - COG3248M nucleoside channel 501665-502963 + 432 16763828 tig STM0447 - COG0544O trigger factor 504085-505356 + 423 16763830 clpX STM0449 - COG1219O ATP-dependent protease ATP-binding subunit 542881-543210 + 109 16763865 ybaB STM0485 - COG0718S hypothetical protein 543926-545800 + 624 39546298 htpG STM0487.S - COG0326O heat shock protein 90 546041-546685 + 214 16763868 adk STM0488 - COG0563F adenylate kinase 598468-598962 - 164 16763916 ppiB STM0536 - COG0652O peptidyl-prolyl cis-trans isomerase B 670449-671012 + 187 16763985 ahpC STM0608 - COG0450O alkyl hydroperoxide reductase C22 subunit 683829-685358 - 509 16763998 citF STM0621 - COG3051C citrate lyase alpha chain/citrate-ACP transferase 709125-711707 - 860 16764025 leuS STM0648 - COG0495J leucyl-tRNA synthetase 738939-740603 - 554 16764050 asnB STM0680 - COG0367E asparagine synthetase B 745258-747210 + 650 16764055 nagE STM0685 - COG1263G N-acetylglucosamine-specific enzyme IIABC 747421-749088 + 555 16764056 glnS STM0686 - COG0008J glutaminyl-tRNA synthetase 749534-750940 + 468 16764057 ybfM STM0687 - - putative outer membrane protein 774461-774667 + 68 16764078 ybfA STM0708 - - putative periplasmic protein 798722-800488 + 588 16764104 sdhA STM0734 - COG1053C succinate dehydrogenase catalytic subunit 804561-805769 + 402 16764107 sucB STM0737 - COG0508C dihydrolipoamide acetyltransferase 805911-807077 + 388 16764108 sucC STM0738 - COG0045C succinyl-CoA synthetase subunit beta 807077-807946 + 289 16764109 sucD STM0739 - COG0074C succinyl-CoA synthetase alpha subunit 817291-817815 + 174 16764119 pal STM0749 - COG2885M peptidoglycan-associated lipoprotein precursor 836363-837115 - 250 16764136 gpmA STM0772 - COG0588G phosphoglyceromutase 890462-890722 - 86 16764186 ybiJ STM0823 - - putative periplasmic protein 899534-900049 + 171 16764195 ompX STM0833 - COG3637M outer membrane protein X 1012963-1014615 - 550 16764299 hcp STM0937 - - hydroxylamine reductase 1047776-1048393 + 205 16764326 dmsB STM0965 - COG0437C anaerobic dimethyl sulfoxide reductase subunit B 1055096-1057378 - 760 16764333 pflB STM0973 - COG1882C pyruvate formate lyase I 1065791-1067464 + 557 16764341 rpsA STM0981 - COG0539J 30S ribosomal protein S1 1089781-1090872 - 363 16764359 ompF STM0999 - COG3203M outer membrane protein F precursor 1160965-1162017 - 350 16764429 ompA STM1070 - COG2885M putative hydrogenase membrane component precurosr 1189507-1190973 + 488 16764460 hpaE STM1102 - COG1012C 4-hydroxyphenylacetate catabolism 1275846-1276019 + 57 16764546 rpmF STM1191 - COG0333J 50S ribosomal protein L32 1280113-1280349 + 78 16764551 acpP STM1196 - COG0236IQ acyl carrier protein 1286369-1287802 + 477 16764558 ptsG STM1203 - COG1263G glucose-specific IIBC component 1368693-1369688 - 331 16764641 gapA STM1290 - COG0057G glyceraldehyde-3-phosphate dehydrogenase 1414772-1414969 + 65 16764686 rpmI STM1335 - COG0291J 50S ribosomal protein L35 1415020-1415376 + 118 16764687 rplT STM1336 - - 50S ribosomal protein L20 1459379-1459615 - 78 16764727 lpp STM1377 - - murein lipoprotein 1459926-1461338 - 470 16764728 pykF STM1378 - - pyruvate kinase 1549676-1550809 - 377 16764819 ompN STM1473 - COG3203M outer membrane protein N precursor 1655173-1656261 + 362 16764916 nmpC STM1572 - COG3203M putative outer membrane porin precursor 1843128-1845806 + 892 16765093 adhE STM1749 - COG1454C,COG1012C iron-dependent alcohol dehydrogenase 1856881-1858416 - 511 16765104 narH STM1763 - COG1140C nitrate reductase 1 beta subunit 1870407-1871261 - 284 16765113 kdsA STM1772 - COG2877M 2-dehydro-3-deoxyphosphooctonate aldolase 1877761-1878708 + 315 16765121 prsA STM1780 - COG0462FE ribose-phosphate pyrophosphokinase 1929554-1930354 + 266 16765172 manY STM1831 - - mannose-specific enzyme IIC 1935547-1935756 - 69 16765178 cspC STM1837 - - cold shock protein 1993786-1994526 - 246 16765241 yebC STM1899 - - hypothetical protein 1995111-1996883 - 590 16765243 aspS STM1901 - COG0173J aspartyl-tRNA synthetase 2077569-2078765 + 398 16765331 ompS STM1995 - COG3203M putative porin 2117238-2117939 + 233 16765369 pudB STM2039 - - polyhedral body protein 2117958-2119622 + 554 16765370 pduC STM2040 - - propanediol dehydratase large subunit 2123044-2123319 + 91 16765375 pduJ STM2045 - COG4577QC polyhedral body protein 2133648-2133983 - 111 16765389 yeeX STM2059 - - hypothetical protein 2326433-2326717 + 94 16765553 rplY STM2224 - COG1825J 50S ribosomal protein L25 2352389-2353048 - 219 16765581 ccmB STM2253 - COG2386O heme exporter protein 2365443-2366579 - 378 16765595 ompC STM2267 - COG3203M outer membrane protein C precursor 2373711-2376347 - 878 16765599 gyrA STM2272 - COG0188L DNA gyrase subunit A 2413999-2414856 - 285 16765634 menB STM2307 - COG0447H naphthoate synthase 2431894-2434620 - 908 39546341 nuoG STM2323.S - COG1034C NADH dehydrogenase gamma subunit 2434651-2435988 - 445 16765651 nuoF STM2324 - COG1894C NADH dehydrogenase I chain F 2447939-2449141 + 400 16765664 ackA STM2337 - COG0282C acetate/propionate kinase 2449218-2451362 + 714 16765665 pta STM2338 - COG0280C,COG0857R phosphate acetyltransferase 2488622-2489836 - 404 16765705 fabB STM2378 - COG0304IQ 3-oxoacyl-(acyl carrier protein) synthase 2530163-2531578 - 471 16765739 gltX STM2415 - COG0008J glutamyl-tRNA synthetase 2544586-2544843 + 85 16765751 ptsH STM2431 - COG1925G phosphohistidinoprotein-hexose phosphotransferase 2546660-2547169 + 169 16765753 crr STM2433 - - glucose-specific PTS system enzyme IIA component 2622805-2624382 - 525 16765830 guaA STM2510 - COG0518F,COG0519F bifunctional GMP synthase/glutamine amidotransferase protein 2624452-2625918 - 488 16765831 guaB STM2511 - COG0516F,COG0517R inositol-5-monophosphate dehydrogenase 2681123-2681509 - 128 16765862 nifU STM2542 - COG0822C NifU-like protein 2681537-2682751 - 404 16765863 nifS STM2543 - COG1104E cysteine desulfurase 2684435-2685238 + 267 16765866 suhB STM2546 - COG0483G inositol monophosphatase 2693681-2694934 - 417 16765875 glyA STM2555 - COG0112E serine hydroxymethyltransferase 2703659-2703997 - 112 16765881 glnB STM2561 - COG0347E regulatory protein P-II 2785906-2786289 - 127 16765966 yfiD STM2646 - COG3445R putative formate acetyltransferase 2814873-2815220 - 115 16765988 rplS STM2673 - - 50S ribosomal protein L19 2816640-2816888 - 82 16765991 rpsP STM2676 - - 30S ribosomal protein S16 2913230-2914750 - 506 16766083 fljB STM2771 - COG1344N flagellar biosynthesis protein 2974854-2975915 - 353 16766135 recA STM2829 - COG0468L recombinase A 2993342-2993884 - 180 16766154 hycF STM2848 - COG1143C hydrogenase 4 Fe-S subunit 2993894-2995603 - 569 16766155 hycE STM2849 - COG3262C,COG3261C hydrogenase 3 large subunit 3097364-3098662 - 432 16766258 eno STM2952 - COG0148G phosphopyruvate hydratase 3120771-3122060 + 429 16766275 sdaC STM2970 - COG0814E putative serine transport protein 3199219-3200736 - 505 16766341 lysS STM3040 - COG1190J lysyl-tRNA synthetase 3215173-3215562 - 129 16766355 gcvH STM3054 - COG0509E glycine cleavage system protein H 3229511-3230590 - 359 16766369 fba STM3068 - COG0191G fructose-bisphosphate aldolase 3230692-3231855 - 387 16766370 pgk STM3069 - - phosphoglycerate kinase 3236393-3238384 - 663 16766377 tktA STM3076 - COG0021G transketolase 3239519-3240439 - 306 16766379 speB STM3078 - COG0010E agmatinase 3251693-3252847 + 384 16766391 metK STM3090 - COG0192H S-adenosylmethionine synthetase 3340254-3340646 - 130 16766476 ygiW STM3176 - - putative outer membrane protein 3374055-3374270 + 71 16766509 rpsU STM3209 - COG0828J 30S ribosomal protein S21 3376401-3378248 + 615 39546362 rpoD STM3211.S - COG0568K RNA polymerase sigma factor 3446185-3448074 - 629 39546364 deaD STM3280.S - COG0513LKJ cysteine sulfinate desulfinase 3449247-3451382 - 711 16766580 pnp STM3282 - COG1185J polynucleotide phosphorylase 3451624-3451893 - 89 16766581 rpsO STM3283 - - 30S ribosomal protein S15 3452988-3453389 - 133 16766583 rbfA STM3285 - COG0858J ribosome-binding factor A 3453610-3456288 - 892 16766584 infB STM3286 - COG0532J translation initiation factor IF-2 3456313-3457815 - 500 16766585 nusA STM3287 - COG0195K transcription elongation factor NusA 3464690-3466624 - 644 16766592 hflB STM3296 - COG0465O ATP-dependent zinc-metallo protease 3470219-3471391 - 390 16766597 yhbZ STM3301 - COG0536R putative GTP-binding protein 3472501-3472758 - 85 16766598 rpmA STM3303 - - 50S ribosomal protein L27 3472778-3473089 - 103 16766599 rplU STM3304 - - 50S ribosomal protein L21 3512406-3512798 - 130 16766639 rpsI STM3344 - - 30S ribosomal protein S9 3512814-3513242 - 142 16766640 rplM STM3345 - - 50S ribosomal protein L13 3543516-3544559 - 347 16766669 mreB STM3374 - COG1077D rod shape-determining protein 3550576-3551925 + 449 16766675 accC STM3380 - COG0439I acetyl-CoA carboxylase 3587366-3587800 - 144 16766710 rplO STM3421 - COG0200J 50S ribosomal protein L15 3587987-3588490 - 167 16766712 rpsE STM3423 - COG0098J 30S ribosomal protein S5 3588505-3588858 - 117 16766713 rplR STM3424 - COG0256J 50S ribosomal protein L18 3588868-3589401 - 177 16766714 rplF STM3425 - COG0097J 50S ribosomal protein L6 3589414-3589806 - 130 16766715 rpsH STM3426 - - 30S ribosomal protein S8 3590714-3591028 - 104 16766718 rplX STM3429 - COG0198J 50S ribosomal protein L24 3591574-3591828 - 84 16766720 rpsQ STM3431 - COG0186J 30S ribosomal protein S17 3592019-3592429 - 136 16766722 rplP STM3433 - COG0197J 50S ribosomal protein L16 3592442-3593143 - 233 16766723 rpsC STM3434 - COG0092J 30S ribosomal protein S3 3593161-3593493 - 110 16766724 rplV STM3435 - - 50S ribosomal protein L22 3593803-3594624 - 273 16766726 rplB STM3437 - COG0090J 50S ribosomal protein L2 3594642-3594944 - 100 16766727 rplW STM3438 - COG0089J 50S ribosomal protein L23 3594941-3595546 - 201 16766728 rplD STM3439 - - 50S ribosomal protein L4 3595557-3596186 - 209 16766729 rplC STM3440 - - 50S ribosomal protein L3 3596219-3596530 - 103 16766730 rpsJ STM3441 - COG0051J 30S ribosomal protein S10 3598302-3599486 - 394 16766734 tuf STM3445 - COG0050J elongation factor Tu 3599558-3601672 - 704 16766735 fusA STM3446 - COG0480J elongation factor EF-2 3601769-3602239 - 156 16766736 rpsG STM3447 - COG0049J 30S ribosomal protein S7 3602335-3602709 - 124 16766737 rpsL STM3448 - - 30S ribosomal protein S12 3606315-3606905 - 196 16766744 slyD STM3455 - COG1047O FKBP-type peptidyl-prolyl cis-trans isomerase 3623515-3626058 + 847 16766762 nirB STM3474 - COG1251C nitrite reductase large subunit 3711495-3712028 - 177 16766828 gntK STM3542 - COG3265G gluconate kinase 2 3760855-3761289 + 144 16766877 uspA STM3591 - COG0589T universal stress protein A 3768593-3769945 + 450 16766883 gor STM3597 - COG1249C glutathione reductase 3827449-3827985 - 178 16766926 lpfA STM3640 - COG3539NU long polar fimbrial protein A precursor 3836439-3836651 + 70 16766935 cspA STM3649 - - major cold shock protein 3839770-3841839 - 689 16766940 glyS STM3655 - COG0751J glycyl-tRNA synthetase beta subunit 3841849-3842760 - 303 16766941 glyQ STM3656 - - glycyl-tRNA synthetase alpha subunit 3875267-3877183 + 638 16766970 mtlA STM3685 - COG2213G,COG4668G mannitol-specific enzyme IIABC component 3896036-3896503 - 155 16766986 secB STM3701 - COG1952U export protein SecB 3897564-3899108 + 514 16766989 pmgI STM3704 - COG0696G phosphoglyceromutase 3902882-3903907 - 341 16766993 tdh STM3708 - COG1063ER L-threonine 3-dehydrogenase 3905316-3906248 + 310 16766995 rfaD STM3710 - COG0451MG ADP-L-glycero-D-mannoheptose-6-epimerase 3922038-3922205 - 55 16767012 rpmG STM3727 - COG0267J 50S ribosomal protein L33 3922226-3922462 - 78 16767013 rpmB STM3728 - COG0227J 50S ribosomal protein L28 3933776-3934051 + 91 16767026 rpoZ STM3741 - COG1758K DNA-directed RNA polymerase omega subunit 4017317-4017976 - 219 16767103 ccmB STM3818 - COG2386O heme exporter protein 4038855-4041269 - 804 16767120 gyrB STM3835 - COG0187L DNA gyrase subunit B 4045685-4045825 + 46 16767124 rpmH STM3839 - COG0230J 50S ribosomal protein L34 4046425-4048071 + 548 16767127 yidC STM3842 - COG0706U inner membrane protein translocase component YidC 4060000-4060725 - 241 16767137 phoU STM3853 - COG0704P high-affinity phosphate uptake regulatory protein 4063585-4064625 - 346 16767141 pstS STM3857 - COG0226P high-affinity phosphate transporter 4069035-4070864 - 609 16767145 glmS STM3861 - COG0449M D-fructose-6-phosphate amidotransferase 4074111-4075493 - 460 16767149 atpD STM3865 - COG0055C ATP synthase subunit B 4076434-4077975 - 513 16767151 atpA STM3867 - COG0056C ATP synthase subunit A 4079066-4079305 - 79 16767154 atpE STM3870 - COG0636C ATP synthase subunit C 4117377-4118852 + 491 16767185 ilvC STM3909 - COG0059EH ketol-acid reductoisomerase 4125584-4126843 + 419 16767192 rho STM3917 - COG1158K transcription termination factor Rho 4215599-4217008 - 469 16767272 glnA STM4007 - - glutamine synthetase 4217384-4219207 + 607 16767274 typA STM4009 - COG1217T GTP-binding elongation factor family protein 4243843-4244745 - 300 16767301 fdoH STM4036 - COG0437C formate dehydrogenase-O beta subunit 4266539-4267159 + 206 16767321 sodA STM4055 - COG0605P superoxide dismutase 4272330-4273292 + 320 16767328 pfkA STM4062 - COG0205G 6-phosphofructokinase 4290265-4291032 - 255 16767347 tpiA STM4081 - COG0149G triosephosphate isomerase 4299150-4300481 - 443 16767357 hslU STM4091 - COG1220O ATP-dependent protease ATP-binding subunit 4305763-4305975 + 70 16767362 rpmE STM4096 - COG0254J 50S ribosomal protein L31 4360603-4361787 + 394 16767400 tuf STM4146 - COG0050J elongation factor Tu 4362402-4362947 + 181 16767402 nusG STM4148 - COG0250K transcription antitermination protein NusG 4363105-4363533 + 142 16767403 rplK STM4149 - - 50S ribosomal protein L11 4363537-4364241 + 234 16767404 rplA STM4150 - - 50S ribosomal protein L1 4364661-4365158 + 165 16767405 rplJ STM4151 - COG0244J 50S ribosomal protein L10 4365225-4365590 + 121 16767406 rplL STM4152 - COG0222J 50S ribosomal protein L7/L12 4365908-4369936 + 1342 16767407 rpoB STM4153 - COG0085K DNA-directed RNA polymerase beta subunit 4370013-4374236 + 1407 16767408 rpoC STM4154 - COG0086K DNA-directed RNA polymerase beta' subunit 4386709-4386981 + 90 16767424 hupA STM4170 - - DNA-binding protein HU-alpha 4391161-4392450 - 429 16767429 purD STM4175 - COG0151F phosphoribosylamine--glycine ligase 4392462-4394051 - 529 16767430 purH STM4176 - - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4408339-4412022 + 1227 39546391 metH STM4188.S - COG0646E,COG1410E B12-dependent methionine synthase 4440162-4441811 + 549 16767471 pgi STM4221 - COG0166G glucose-6-phosphate isomerase 4461489-4461701 + 70 16767490 yjbJ STM4240 - COG3237S putative cytoplasmic protein 4530167-4530502 - 111 16767539 phnA STM4289 - COG2824P putative alkylphosphonate uptake protein 4570945-4572381 - 478 16767575 aspA STM4326 - COG1027E aspartate ammonia-lyase 4574774-4575067 + 97 16767578 groES STM4329 - COG0234O co-chaperonin GroES 4575111-4576757 + 548 16767579 groEL STM4330 - COG0459O chaperonin GroEL 4579610-4580176 + 188 16767583 efp STM4334 - COG0231J elongation factor P 4583982-4585772 - 596 16767592 frdA STM4343 - COG1053C fumarate reductase 4607713-4608717 + 334 16767610 hflC STM4364 - COG0330O FtsH modulator 4609096-4610394 + 432 16767612 purA STM4366 - - adenylosuccinate synthetase 4626646-4626951 + 101 16767630 sgaB STM4384 - COG3414G putative PTS enzyme II 4627439-4628089 + 216 16767632 sgaH STM4386 - COG0269G putative hexulose phosphate synthase 4630514-4630909 + 131 16767637 rpsF STM4391 - COG0360J 30S ribosomal protein S6 4631235-4631462 + 75 16767639 rpsR STM4393 - - 30S ribosomal protein S18 4631504-4631953 + 149 16767640 rplI STM4394 - COG0359J 50S ribosomal protein L9 4654741-4655271 - 176 16767660 ppa STM4414 - COG0221C inorganic pyrophosphatase 4684291-4684653 + 120 16767687 - STM4441 - - putative cytoplasmic protein 4703033-4703419 - 128 16767703 yjgF STM4458 - COG0251J putative translation initiation inhibitor 4717013-4719868 - 951 16767720 valS STM4475 - COG0525J valyl-tRNA synthetase